Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1094

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1093 and EX28DRAFT_1094 are separated by 10 nucleotidesEX28DRAFT_1094 and EX28DRAFT_1095 overlap by 4 nucleotides EX28DRAFT_1093: EX28DRAFT_1093 - uncharacterized peroxidase-related enzyme, at 1,104,336 to 1,105,427 _1093 EX28DRAFT_1094: EX28DRAFT_1094 - putative FMN-dependent luciferase-like monooxygenase, KPN_01858 family, at 1,105,438 to 1,106,427 _1094 EX28DRAFT_1095: EX28DRAFT_1095 - ATPase components of various ABC-type transport systems, contain duplicated ATPase, at 1,106,424 to 1,108,031 _1095 Position (kb) 1105 1106 1107Strain fitness (log2 ratio) -2 -1 0 1at 1104.714 kb on - strand, within EX28DRAFT_1093at 1105.207 kb on + strand, within EX28DRAFT_1093at 1105.207 kb on + strand, within EX28DRAFT_1093at 1105.208 kb on - strand, within EX28DRAFT_1093at 1105.208 kb on - strand, within EX28DRAFT_1093at 1105.208 kb on - strand, within EX28DRAFT_1093at 1105.386 kb on - strandat 1105.427 kb on + strandat 1105.427 kb on + strandat 1105.427 kb on + strandat 1105.428 kb on - strandat 1105.428 kb on - strandat 1105.428 kb on - strandat 1105.458 kb on + strandat 1105.533 kb on + strandat 1105.534 kb on - strandat 1105.831 kb on + strand, within EX28DRAFT_1094at 1105.832 kb on - strand, within EX28DRAFT_1094at 1105.938 kb on + strand, within EX28DRAFT_1094at 1106.483 kb on + strandat 1106.486 kb on - strandat 1106.604 kb on - strand, within EX28DRAFT_1095at 1107.006 kb on - strand, within EX28DRAFT_1095at 1107.107 kb on + strand, within EX28DRAFT_1095

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,104,714 - EX28DRAFT_1093 0.35 +0.0
1,105,207 + EX28DRAFT_1093 0.80 -0.4
1,105,207 + EX28DRAFT_1093 0.80 +0.1
1,105,208 - EX28DRAFT_1093 0.80 +0.8
1,105,208 - EX28DRAFT_1093 0.80 -0.4
1,105,208 - EX28DRAFT_1093 0.80 -0.1
1,105,386 - -0.1
1,105,427 + +0.0
1,105,427 + +1.0
1,105,427 + -1.6
1,105,428 - +0.3
1,105,428 - -0.5
1,105,428 - +0.7
1,105,458 + -0.4
1,105,533 + +0.5
1,105,534 - +0.6
1,105,831 + EX28DRAFT_1094 0.40 +0.1
1,105,832 - EX28DRAFT_1094 0.40 -0.4
1,105,938 + EX28DRAFT_1094 0.51 -0.5
1,106,483 + +0.7
1,106,486 - -0.4
1,106,604 - EX28DRAFT_1095 0.11 -1.1
1,107,006 - EX28DRAFT_1095 0.36 -2.2
1,107,107 + EX28DRAFT_1095 0.42 -0.5

Or see this region's nucleotide sequence