Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1032

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1030 and EX28DRAFT_1031 are separated by 183 nucleotidesEX28DRAFT_1031 and EX28DRAFT_1032 are separated by 85 nucleotidesEX28DRAFT_1032 and EX28DRAFT_1033 are separated by 122 nucleotides EX28DRAFT_1030: EX28DRAFT_1030 - 1-pyrroline dehydrogenase, at 1,037,144 to 1,038,568 _1030 EX28DRAFT_1031: EX28DRAFT_1031 - Protein of unknown function (DUF2566), at 1,038,752 to 1,038,925 _1031 EX28DRAFT_1032: EX28DRAFT_1032 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,039,011 to 1,039,766 _1032 EX28DRAFT_1033: EX28DRAFT_1033 - Uncharacterized protein conserved in bacteria, putative virulence factor, at 1,039,889 to 1,042,066 _1033 Position (kb) 1039 1040Strain fitness (log2 ratio) -3 -2 -1 0 1at 1038.021 kb on - strand, within EX28DRAFT_1030at 1038.172 kb on + strand, within EX28DRAFT_1030at 1038.219 kb on - strand, within EX28DRAFT_1030at 1038.219 kb on - strand, within EX28DRAFT_1030at 1038.219 kb on - strand, within EX28DRAFT_1030at 1038.422 kb on + strand, within EX28DRAFT_1030at 1038.508 kb on + strandat 1038.508 kb on + strandat 1038.509 kb on - strandat 1038.533 kb on + strandat 1038.567 kb on - strandat 1038.567 kb on - strandat 1038.663 kb on - strandat 1038.697 kb on + strandat 1038.705 kb on + strandat 1038.747 kb on - strandat 1038.790 kb on + strand, within EX28DRAFT_1031at 1038.814 kb on + strand, within EX28DRAFT_1031at 1038.979 kb on + strandat 1038.980 kb on - strandat 1039.010 kb on + strandat 1039.011 kb on - strandat 1039.126 kb on - strand, within EX28DRAFT_1032at 1039.197 kb on + strand, within EX28DRAFT_1032at 1039.218 kb on + strand, within EX28DRAFT_1032at 1039.218 kb on + strand, within EX28DRAFT_1032at 1039.218 kb on + strand, within EX28DRAFT_1032at 1039.218 kb on + strand, within EX28DRAFT_1032at 1039.218 kb on + strand, within EX28DRAFT_1032at 1039.224 kb on + strand, within EX28DRAFT_1032at 1039.225 kb on - strand, within EX28DRAFT_1032at 1039.227 kb on - strand, within EX28DRAFT_1032at 1039.296 kb on + strand, within EX28DRAFT_1032at 1039.418 kb on + strand, within EX28DRAFT_1032at 1039.419 kb on - strand, within EX28DRAFT_1032at 1039.522 kb on - strand, within EX28DRAFT_1032at 1039.754 kb on + strandat 1039.811 kb on + strandat 1039.950 kb on + strandat 1039.977 kb on + strandat 1039.999 kb on - strandat 1040.000 kb on + strandat 1040.001 kb on - strandat 1040.416 kb on + strand, within EX28DRAFT_1033at 1040.417 kb on - strand, within EX28DRAFT_1033at 1040.438 kb on - strand, within EX28DRAFT_1033at 1040.438 kb on - strand, within EX28DRAFT_1033at 1040.438 kb on - strand, within EX28DRAFT_1033at 1040.438 kb on - strand, within EX28DRAFT_1033at 1040.438 kb on - strand, within EX28DRAFT_1033at 1040.631 kb on + strand, within EX28DRAFT_1033

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,038,021 - EX28DRAFT_1030 0.62 +0.7
1,038,172 + EX28DRAFT_1030 0.72 -0.3
1,038,219 - EX28DRAFT_1030 0.75 -0.2
1,038,219 - EX28DRAFT_1030 0.75 -0.8
1,038,219 - EX28DRAFT_1030 0.75 +0.5
1,038,422 + EX28DRAFT_1030 0.90 +0.3
1,038,508 + +0.3
1,038,508 + -0.2
1,038,509 - +1.7
1,038,533 + +0.4
1,038,567 - -1.1
1,038,567 - +1.7
1,038,663 - +0.4
1,038,697 + -0.4
1,038,705 + +1.6
1,038,747 - -0.1
1,038,790 + EX28DRAFT_1031 0.22 -2.2
1,038,814 + EX28DRAFT_1031 0.36 -0.2
1,038,979 + +0.8
1,038,980 - +0.0
1,039,010 + -0.3
1,039,011 - +0.0
1,039,126 - EX28DRAFT_1032 0.15 -0.9
1,039,197 + EX28DRAFT_1032 0.25 +1.3
1,039,218 + EX28DRAFT_1032 0.27 +0.8
1,039,218 + EX28DRAFT_1032 0.27 +0.7
1,039,218 + EX28DRAFT_1032 0.27 +1.1
1,039,218 + EX28DRAFT_1032 0.27 +0.6
1,039,218 + EX28DRAFT_1032 0.27 +0.7
1,039,224 + EX28DRAFT_1032 0.28 -0.5
1,039,225 - EX28DRAFT_1032 0.28 +0.3
1,039,227 - EX28DRAFT_1032 0.29 -2.9
1,039,296 + EX28DRAFT_1032 0.38 +1.0
1,039,418 + EX28DRAFT_1032 0.54 +0.5
1,039,419 - EX28DRAFT_1032 0.54 +0.9
1,039,522 - EX28DRAFT_1032 0.68 -0.6
1,039,754 + -0.2
1,039,811 + +0.1
1,039,950 + +0.4
1,039,977 + +0.3
1,039,999 - +0.3
1,040,000 + -1.6
1,040,001 - -2.2
1,040,416 + EX28DRAFT_1033 0.24 -1.0
1,040,417 - EX28DRAFT_1033 0.24 +0.2
1,040,438 - EX28DRAFT_1033 0.25 +0.6
1,040,438 - EX28DRAFT_1033 0.25 -0.1
1,040,438 - EX28DRAFT_1033 0.25 +0.3
1,040,438 - EX28DRAFT_1033 0.25 -2.2
1,040,438 - EX28DRAFT_1033 0.25 -1.2
1,040,631 + EX28DRAFT_1033 0.34 -0.2

Or see this region's nucleotide sequence