Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0883

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0879 and EX28DRAFT_0880 are separated by 120 nucleotidesEX28DRAFT_0880 and EX28DRAFT_0881 are separated by 41 nucleotidesEX28DRAFT_0881 and EX28DRAFT_0882 are separated by 2 nucleotidesEX28DRAFT_0882 and EX28DRAFT_0883 are separated by 97 nucleotidesEX28DRAFT_0883 and EX28DRAFT_0884 overlap by 4 nucleotidesEX28DRAFT_0884 and EX28DRAFT_0885 are separated by 66 nucleotidesEX28DRAFT_0885 and EX28DRAFT_0886 are separated by 31 nucleotides EX28DRAFT_0879: EX28DRAFT_0879 - Helix-turn-helix, at 891,403 to 891,702 _0879 EX28DRAFT_0880: EX28DRAFT_0880 - Regulatory phage protein cox, at 891,823 to 892,101 _0880 EX28DRAFT_0881: EX28DRAFT_0881 - hypothetical protein, at 892,143 to 892,382 _0881 EX28DRAFT_0882: EX28DRAFT_0882 - hypothetical protein, at 892,385 to 892,573 _0882 EX28DRAFT_0883: EX28DRAFT_0883 - hypothetical protein, at 892,671 to 892,841 _0883 EX28DRAFT_0884: EX28DRAFT_0884 - hypothetical protein, at 892,838 to 893,338 _0884 EX28DRAFT_0885: EX28DRAFT_0885 - Protein of unknown function (DUF2732), at 893,405 to 893,614 _0885 EX28DRAFT_0886: EX28DRAFT_0886 - hypothetical protein, at 893,646 to 893,909 _0886 Position (kb) 892 893Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 891.786 kb on - strandat 891.796 kb on - strandat 891.817 kb on + strandat 891.839 kb on + strandat 891.840 kb on - strandat 891.840 kb on - strandat 891.840 kb on - strandat 891.840 kb on - strandat 891.840 kb on - strandat 891.840 kb on - strandat 891.843 kb on + strandat 891.843 kb on + strandat 891.882 kb on + strand, within EX28DRAFT_0880at 891.888 kb on + strand, within EX28DRAFT_0880at 891.889 kb on - strand, within EX28DRAFT_0880at 891.889 kb on - strand, within EX28DRAFT_0880at 891.985 kb on + strand, within EX28DRAFT_0880at 891.994 kb on + strand, within EX28DRAFT_0880at 891.994 kb on + strand, within EX28DRAFT_0880at 892.030 kb on + strand, within EX28DRAFT_0880at 892.178 kb on + strand, within EX28DRAFT_0881at 892.179 kb on - strand, within EX28DRAFT_0881at 892.190 kb on + strand, within EX28DRAFT_0881at 892.326 kb on + strand, within EX28DRAFT_0881at 892.327 kb on - strand, within EX28DRAFT_0881at 892.376 kb on + strandat 892.377 kb on - strandat 892.377 kb on - strandat 892.386 kb on + strandat 892.386 kb on + strandat 892.387 kb on - strandat 892.387 kb on - strandat 892.387 kb on - strandat 892.394 kb on - strandat 892.408 kb on + strand, within EX28DRAFT_0882at 892.426 kb on + strand, within EX28DRAFT_0882at 892.426 kb on + strand, within EX28DRAFT_0882at 892.513 kb on + strand, within EX28DRAFT_0882at 892.547 kb on + strand, within EX28DRAFT_0882at 892.568 kb on - strandat 892.568 kb on - strandat 892.578 kb on + strandat 892.578 kb on + strandat 892.644 kb on + strandat 892.671 kb on - strandat 892.766 kb on - strand, within EX28DRAFT_0883at 892.766 kb on - strand, within EX28DRAFT_0883at 892.904 kb on + strand, within EX28DRAFT_0884at 892.905 kb on - strand, within EX28DRAFT_0884at 892.996 kb on - strand, within EX28DRAFT_0884at 893.197 kb on + strand, within EX28DRAFT_0884at 893.198 kb on - strand, within EX28DRAFT_0884at 893.296 kb on + strandat 893.297 kb on - strandat 893.305 kb on - strandat 893.327 kb on + strandat 893.332 kb on - strandat 893.336 kb on + strandat 893.399 kb on - strandat 893.527 kb on + strand, within EX28DRAFT_0885at 893.569 kb on - strand, within EX28DRAFT_0885at 893.569 kb on - strand, within EX28DRAFT_0885at 893.572 kb on - strand, within EX28DRAFT_0885at 893.572 kb on - strand, within EX28DRAFT_0885at 893.572 kb on - strand, within EX28DRAFT_0885at 893.653 kb on + strandat 893.666 kb on + strandat 893.676 kb on + strand, within EX28DRAFT_0886at 893.677 kb on - strand, within EX28DRAFT_0886at 893.798 kb on + strand, within EX28DRAFT_0886at 893.798 kb on + strand, within EX28DRAFT_0886at 893.798 kb on + strand, within EX28DRAFT_0886at 893.798 kb on + strand, within EX28DRAFT_0886at 893.798 kb on + strand, within EX28DRAFT_0886at 893.799 kb on - strand, within EX28DRAFT_0886

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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891,786 - +0.1
891,796 - -1.7
891,817 + -0.2
891,839 + +0.9
891,840 - +0.6
891,840 - -0.1
891,840 - -0.5
891,840 - +0.3
891,840 - -0.7
891,840 - -0.1
891,843 + -0.5
891,843 + +0.2
891,882 + EX28DRAFT_0880 0.21 +0.0
891,888 + EX28DRAFT_0880 0.23 +2.4
891,889 - EX28DRAFT_0880 0.24 +0.1
891,889 - EX28DRAFT_0880 0.24 -0.0
891,985 + EX28DRAFT_0880 0.58 +0.9
891,994 + EX28DRAFT_0880 0.61 -4.4
891,994 + EX28DRAFT_0880 0.61 +0.4
892,030 + EX28DRAFT_0880 0.74 +1.0
892,178 + EX28DRAFT_0881 0.15 +1.1
892,179 - EX28DRAFT_0881 0.15 -0.2
892,190 + EX28DRAFT_0881 0.20 +0.3
892,326 + EX28DRAFT_0881 0.76 +1.4
892,327 - EX28DRAFT_0881 0.77 -0.2
892,376 + -0.3
892,377 - +0.1
892,377 - +0.6
892,386 + -1.0
892,386 + -0.1
892,387 - -4.3
892,387 - -0.3
892,387 - -0.4
892,394 - -1.3
892,408 + EX28DRAFT_0882 0.12 +1.1
892,426 + EX28DRAFT_0882 0.22 -0.0
892,426 + EX28DRAFT_0882 0.22 +0.3
892,513 + EX28DRAFT_0882 0.68 -0.4
892,547 + EX28DRAFT_0882 0.86 +1.2
892,568 - -1.1
892,568 - +1.3
892,578 + -0.4
892,578 + +0.2
892,644 + -0.5
892,671 - +2.7
892,766 - EX28DRAFT_0883 0.56 +0.1
892,766 - EX28DRAFT_0883 0.56 -1.5
892,904 + EX28DRAFT_0884 0.13 +0.4
892,905 - EX28DRAFT_0884 0.13 -0.3
892,996 - EX28DRAFT_0884 0.32 +1.7
893,197 + EX28DRAFT_0884 0.72 +2.3
893,198 - EX28DRAFT_0884 0.72 -0.7
893,296 + -0.5
893,297 - +0.0
893,305 - -0.8
893,327 + +0.1
893,332 - -0.2
893,336 + +0.5
893,399 - -0.7
893,527 + EX28DRAFT_0885 0.58 +1.1
893,569 - EX28DRAFT_0885 0.78 -0.8
893,569 - EX28DRAFT_0885 0.78 +0.8
893,572 - EX28DRAFT_0885 0.80 -0.7
893,572 - EX28DRAFT_0885 0.80 +0.8
893,572 - EX28DRAFT_0885 0.80 +0.8
893,653 + -2.5
893,666 + +0.4
893,676 + EX28DRAFT_0886 0.11 -0.2
893,677 - EX28DRAFT_0886 0.12 -1.7
893,798 + EX28DRAFT_0886 0.58 -2.3
893,798 + EX28DRAFT_0886 0.58 -0.5
893,798 + EX28DRAFT_0886 0.58 -0.2
893,798 + EX28DRAFT_0886 0.58 -0.6
893,798 + EX28DRAFT_0886 0.58 -2.6
893,799 - EX28DRAFT_0886 0.58 +0.1

Or see this region's nucleotide sequence