Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0609

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0606 and EX28DRAFT_0607 overlap by 1 nucleotidesEX28DRAFT_0607 and EX28DRAFT_0608 are separated by 2 nucleotidesEX28DRAFT_0608 and EX28DRAFT_0609 overlap by 4 nucleotidesEX28DRAFT_0609 and EX28DRAFT_0610 are separated by 4 nucleotidesEX28DRAFT_0610 and EX28DRAFT_0611 are separated by 106 nucleotides EX28DRAFT_0606: EX28DRAFT_0606 - flagellar biosynthetic protein FliP, at 605,888 to 606,625 _0606 EX28DRAFT_0607: EX28DRAFT_0607 - flagellar biosynthetic protein FliO, at 606,625 to 606,999 _0607 EX28DRAFT_0608: EX28DRAFT_0608 - flagellar motor switch protein FliN, at 607,002 to 607,415 _0608 EX28DRAFT_0609: EX28DRAFT_0609 - flagellar motor switch protein FliM, at 607,412 to 608,416 _0609 EX28DRAFT_0610: EX28DRAFT_0610 - Flagellar basal body-associated protein, at 608,421 to 608,891 _0610 EX28DRAFT_0611: EX28DRAFT_0611 - Flagellar hook-length control protein, at 608,998 to 610,233 _0611 Position (kb) 607 608 609Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 606.467 kb on - strand, within EX28DRAFT_0606at 606.467 kb on - strand, within EX28DRAFT_0606at 606.467 kb on - strand, within EX28DRAFT_0606at 606.481 kb on + strand, within EX28DRAFT_0606at 606.567 kb on + strandat 606.567 kb on + strandat 606.568 kb on - strandat 606.568 kb on - strandat 606.726 kb on + strand, within EX28DRAFT_0607at 606.726 kb on + strand, within EX28DRAFT_0607at 606.727 kb on - strand, within EX28DRAFT_0607at 606.730 kb on + strand, within EX28DRAFT_0607at 606.730 kb on + strand, within EX28DRAFT_0607at 606.730 kb on + strand, within EX28DRAFT_0607at 606.730 kb on + strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.733 kb on + strand, within EX28DRAFT_0607at 606.734 kb on - strand, within EX28DRAFT_0607at 606.734 kb on - strand, within EX28DRAFT_0607at 606.744 kb on + strand, within EX28DRAFT_0607at 606.744 kb on + strand, within EX28DRAFT_0607at 606.906 kb on + strand, within EX28DRAFT_0607at 606.906 kb on + strand, within EX28DRAFT_0607at 606.916 kb on - strand, within EX28DRAFT_0607at 606.916 kb on - strand, within EX28DRAFT_0607at 606.979 kb on + strandat 607.022 kb on + strandat 607.022 kb on + strandat 607.022 kb on + strandat 607.022 kb on + strandat 607.022 kb on + strandat 607.023 kb on - strandat 607.053 kb on - strand, within EX28DRAFT_0608at 607.056 kb on + strand, within EX28DRAFT_0608at 607.063 kb on + strand, within EX28DRAFT_0608at 607.063 kb on + strand, within EX28DRAFT_0608at 607.064 kb on - strand, within EX28DRAFT_0608at 607.191 kb on - strand, within EX28DRAFT_0608at 607.347 kb on + strand, within EX28DRAFT_0608at 607.541 kb on - strand, within EX28DRAFT_0609at 607.583 kb on + strand, within EX28DRAFT_0609at 607.846 kb on + strand, within EX28DRAFT_0609at 607.853 kb on - strand, within EX28DRAFT_0609at 607.921 kb on + strand, within EX28DRAFT_0609at 607.922 kb on - strand, within EX28DRAFT_0609at 607.923 kb on + strand, within EX28DRAFT_0609at 607.923 kb on + strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.994 kb on + strand, within EX28DRAFT_0609at 607.994 kb on + strand, within EX28DRAFT_0609at 607.994 kb on + strand, within EX28DRAFT_0609at 607.994 kb on + strand, within EX28DRAFT_0609at 608.179 kb on + strand, within EX28DRAFT_0609at 608.180 kb on - strand, within EX28DRAFT_0609at 608.219 kb on - strand, within EX28DRAFT_0609at 608.276 kb on + strand, within EX28DRAFT_0609at 608.276 kb on + strand, within EX28DRAFT_0609at 608.277 kb on - strand, within EX28DRAFT_0609at 608.277 kb on - strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.313 kb on - strand, within EX28DRAFT_0609at 608.313 kb on - strand, within EX28DRAFT_0609at 608.315 kb on - strand, within EX28DRAFT_0609at 608.317 kb on - strandat 608.404 kb on + strandat 608.405 kb on - strandat 608.441 kb on + strandat 608.442 kb on - strandat 608.442 kb on - strandat 608.442 kb on - strandat 608.442 kb on - strandat 608.443 kb on + strandat 608.468 kb on + strand, within EX28DRAFT_0610at 608.468 kb on + strand, within EX28DRAFT_0610at 608.468 kb on + strand, within EX28DRAFT_0610at 608.468 kb on + strand, within EX28DRAFT_0610at 608.468 kb on + strand, within EX28DRAFT_0610at 608.608 kb on + strand, within EX28DRAFT_0610at 608.608 kb on + strand, within EX28DRAFT_0610at 608.608 kb on + strand, within EX28DRAFT_0610at 608.655 kb on - strand, within EX28DRAFT_0610at 608.665 kb on + strand, within EX28DRAFT_0610at 608.666 kb on - strand, within EX28DRAFT_0610at 608.666 kb on - strand, within EX28DRAFT_0610at 608.705 kb on + strand, within EX28DRAFT_0610at 608.783 kb on + strand, within EX28DRAFT_0610at 608.784 kb on - strand, within EX28DRAFT_0610at 608.784 kb on - strand, within EX28DRAFT_0610at 608.795 kb on + strand, within EX28DRAFT_0610at 608.795 kb on + strand, within EX28DRAFT_0610at 608.796 kb on - strand, within EX28DRAFT_0610at 608.796 kb on - strand, within EX28DRAFT_0610at 608.796 kb on - strand, within EX28DRAFT_0610at 608.797 kb on + strand, within EX28DRAFT_0610at 608.797 kb on + strand, within EX28DRAFT_0610at 608.798 kb on - strand, within EX28DRAFT_0610at 608.922 kb on + strandat 608.922 kb on + strandat 608.922 kb on + strandat 608.922 kb on + strandat 608.923 kb on - strandat 608.923 kb on - strandat 608.923 kb on - strandat 608.923 kb on - strandat 608.925 kb on + strandat 608.926 kb on - strandat 609.014 kb on - strandat 609.372 kb on + strand, within EX28DRAFT_0611

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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606,467 - EX28DRAFT_0606 0.78 -1.4
606,467 - EX28DRAFT_0606 0.78 +0.3
606,467 - EX28DRAFT_0606 0.78 +0.3
606,481 + EX28DRAFT_0606 0.80 -0.7
606,567 + -0.3
606,567 + +0.8
606,568 - +1.0
606,568 - -0.4
606,726 + EX28DRAFT_0607 0.27 -2.7
606,726 + EX28DRAFT_0607 0.27 -0.2
606,727 - EX28DRAFT_0607 0.27 +0.2
606,730 + EX28DRAFT_0607 0.28 -0.0
606,730 + EX28DRAFT_0607 0.28 +0.3
606,730 + EX28DRAFT_0607 0.28 +0.2
606,730 + EX28DRAFT_0607 0.28 +0.1
606,731 - EX28DRAFT_0607 0.28 -0.3
606,731 - EX28DRAFT_0607 0.28 -0.5
606,731 - EX28DRAFT_0607 0.28 +0.5
606,731 - EX28DRAFT_0607 0.28 +1.5
606,731 - EX28DRAFT_0607 0.28 +0.5
606,731 - EX28DRAFT_0607 0.28 +0.0
606,733 + EX28DRAFT_0607 0.29 +0.1
606,734 - EX28DRAFT_0607 0.29 +0.0
606,734 - EX28DRAFT_0607 0.29 +0.1
606,744 + EX28DRAFT_0607 0.32 +0.8
606,744 + EX28DRAFT_0607 0.32 +0.7
606,906 + EX28DRAFT_0607 0.75 +0.6
606,906 + EX28DRAFT_0607 0.75 +0.1
606,916 - EX28DRAFT_0607 0.78 +0.7
606,916 - EX28DRAFT_0607 0.78 +0.2
606,979 + +2.8
607,022 + +0.6
607,022 + -0.8
607,022 + -0.1
607,022 + +0.6
607,022 + +0.2
607,023 - -0.5
607,053 - EX28DRAFT_0608 0.12 +1.0
607,056 + EX28DRAFT_0608 0.13 +0.4
607,063 + EX28DRAFT_0608 0.15 +0.1
607,063 + EX28DRAFT_0608 0.15 +0.8
607,064 - EX28DRAFT_0608 0.15 -0.1
607,191 - EX28DRAFT_0608 0.46 +0.3
607,347 + EX28DRAFT_0608 0.83 +0.6
607,541 - EX28DRAFT_0609 0.13 +1.1
607,583 + EX28DRAFT_0609 0.17 +0.1
607,846 + EX28DRAFT_0609 0.43 +1.5
607,853 - EX28DRAFT_0609 0.44 +0.9
607,921 + EX28DRAFT_0609 0.51 +0.8
607,922 - EX28DRAFT_0609 0.51 +0.3
607,923 + EX28DRAFT_0609 0.51 +0.2
607,923 + EX28DRAFT_0609 0.51 -3.7
607,924 - EX28DRAFT_0609 0.51 -0.4
607,924 - EX28DRAFT_0609 0.51 +1.1
607,924 - EX28DRAFT_0609 0.51 -0.1
607,924 - EX28DRAFT_0609 0.51 -2.0
607,924 - EX28DRAFT_0609 0.51 +0.4
607,924 - EX28DRAFT_0609 0.51 -0.6
607,924 - EX28DRAFT_0609 0.51 +0.1
607,924 - EX28DRAFT_0609 0.51 +0.2
607,994 + EX28DRAFT_0609 0.58 -0.2
607,994 + EX28DRAFT_0609 0.58 +0.5
607,994 + EX28DRAFT_0609 0.58 +1.4
607,994 + EX28DRAFT_0609 0.58 -0.9
608,179 + EX28DRAFT_0609 0.76 +0.2
608,180 - EX28DRAFT_0609 0.76 +1.5
608,219 - EX28DRAFT_0609 0.80 -1.1
608,276 + EX28DRAFT_0609 0.86 +0.9
608,276 + EX28DRAFT_0609 0.86 +0.5
608,277 - EX28DRAFT_0609 0.86 +0.4
608,277 - EX28DRAFT_0609 0.86 +0.5
608,312 + EX28DRAFT_0609 0.90 +0.1
608,312 + EX28DRAFT_0609 0.90 -1.4
608,312 + EX28DRAFT_0609 0.90 -0.5
608,312 + EX28DRAFT_0609 0.90 +0.4
608,312 + EX28DRAFT_0609 0.90 +0.4
608,313 - EX28DRAFT_0609 0.90 +1.2
608,313 - EX28DRAFT_0609 0.90 +0.6
608,315 - EX28DRAFT_0609 0.90 -0.0
608,317 - +0.4
608,404 + +0.2
608,405 - +0.2
608,441 + +0.4
608,442 - -0.3
608,442 - +0.3
608,442 - +0.6
608,442 - -2.0
608,443 + +0.1
608,468 + EX28DRAFT_0610 0.10 -0.3
608,468 + EX28DRAFT_0610 0.10 +0.1
608,468 + EX28DRAFT_0610 0.10 +0.4
608,468 + EX28DRAFT_0610 0.10 -0.9
608,468 + EX28DRAFT_0610 0.10 -0.6
608,608 + EX28DRAFT_0610 0.40 +1.0
608,608 + EX28DRAFT_0610 0.40 +1.2
608,608 + EX28DRAFT_0610 0.40 -3.4
608,655 - EX28DRAFT_0610 0.50 +0.0
608,665 + EX28DRAFT_0610 0.52 +1.2
608,666 - EX28DRAFT_0610 0.52 +0.6
608,666 - EX28DRAFT_0610 0.52 -0.1
608,705 + EX28DRAFT_0610 0.60 +0.9
608,783 + EX28DRAFT_0610 0.77 +1.8
608,784 - EX28DRAFT_0610 0.77 -0.6
608,784 - EX28DRAFT_0610 0.77 +1.4
608,795 + EX28DRAFT_0610 0.79 +0.2
608,795 + EX28DRAFT_0610 0.79 +0.3
608,796 - EX28DRAFT_0610 0.80 +0.5
608,796 - EX28DRAFT_0610 0.80 +0.1
608,796 - EX28DRAFT_0610 0.80 +3.0
608,797 + EX28DRAFT_0610 0.80 +0.6
608,797 + EX28DRAFT_0610 0.80 +0.1
608,798 - EX28DRAFT_0610 0.80 +0.7
608,922 + +0.2
608,922 + +1.5
608,922 + +1.3
608,922 + -0.5
608,923 - -1.0
608,923 - +0.3
608,923 - -0.6
608,923 - -0.2
608,925 + -0.2
608,926 - -1.8
609,014 - +0.7
609,372 + EX28DRAFT_0611 0.30 +0.9

Or see this region's nucleotide sequence