Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0578 and EX28DRAFT_0579 are separated by 215 nucleotides EX28DRAFT_0579 and EX28DRAFT_0580 overlap by 4 nucleotides
EX28DRAFT_0578: EX28DRAFT_0578 - Uncharacterized protein conserved in bacteria, at 576,991 to 577,788
_0578
EX28DRAFT_0579: EX28DRAFT_0579 - Uncharacterized protein conserved in bacteria (DUF2256), at 578,004 to 578,150
_0579
EX28DRAFT_0580: EX28DRAFT_0580 - Uncharacterized protein related to deoxyribodipyrimidine photolyase, at 578,147 to 579,676
_0580
Position (kb) 578
579 Strain fitness (log2 ratio) -2
-1
0
1
2 at 577.359 kb on + strand, within EX28DRAFT_0578 at 577.515 kb on + strand, within EX28DRAFT_0578 at 577.515 kb on + strand, within EX28DRAFT_0578 at 577.515 kb on + strand, within EX28DRAFT_0578 at 577.516 kb on - strand, within EX28DRAFT_0578 at 577.696 kb on - strand, within EX28DRAFT_0578 at 577.784 kb on - strand at 577.843 kb on - strand at 577.885 kb on + strand at 577.890 kb on + strand at 577.891 kb on - strand at 577.899 kb on + strand at 577.900 kb on - strand at 577.995 kb on - strand at 578.116 kb on - strand, within EX28DRAFT_0579 at 578.116 kb on - strand, within EX28DRAFT_0579 at 578.229 kb on - strand at 578.229 kb on - strand at 578.473 kb on + strand, within EX28DRAFT_0580 at 578.634 kb on + strand, within EX28DRAFT_0580 at 578.635 kb on - strand, within EX28DRAFT_0580 at 578.751 kb on - strand, within EX28DRAFT_0580 at 578.869 kb on + strand, within EX28DRAFT_0580 at 579.099 kb on - strand, within EX28DRAFT_0580
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 577,359 + EX28DRAFT_0578 0.46 -0.2 577,515 + EX28DRAFT_0578 0.66 +0.0 577,515 + EX28DRAFT_0578 0.66 +0.9 577,515 + EX28DRAFT_0578 0.66 +0.1 577,516 - EX28DRAFT_0578 0.66 +0.7 577,696 - EX28DRAFT_0578 0.88 +0.4 577,784 - +1.2 577,843 - +0.1 577,885 + +1.9 577,890 + -0.3 577,891 - +1.1 577,899 + -0.2 577,900 - -1.4 577,995 - -0.1 578,116 - EX28DRAFT_0579 0.76 -0.9 578,116 - EX28DRAFT_0579 0.76 -1.3 578,229 - -0.0 578,229 - +0.1 578,473 + EX28DRAFT_0580 0.21 +0.7 578,634 + EX28DRAFT_0580 0.32 -0.1 578,635 - EX28DRAFT_0580 0.32 -2.2 578,751 - EX28DRAFT_0580 0.39 +0.2 578,869 + EX28DRAFT_0580 0.47 +0.3 579,099 - EX28DRAFT_0580 0.62 -0.3
Or see this region's nucleotide sequence