Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0168

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0166 and EX28DRAFT_0167 are separated by 207 nucleotidesEX28DRAFT_0167 and EX28DRAFT_0168 overlap by 4 nucleotidesEX28DRAFT_0168 and EX28DRAFT_0169 are separated by 266 nucleotides EX28DRAFT_0166: EX28DRAFT_0166 - polyphosphate kinase 1, at 113,789 to 115,849 _0166 EX28DRAFT_0167: EX28DRAFT_0167 - phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent, at 116,057 to 116,698 _0167 EX28DRAFT_0168: EX28DRAFT_0168 - phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 116,695 to 117,732 _0168 EX28DRAFT_0169: EX28DRAFT_0169 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 117,999 to 119,429 _0169 Position (kb) 116 117 118Strain fitness (log2 ratio) -3 -2 -1 0 1at 115.701 kb on + strandat 115.702 kb on - strandat 115.726 kb on - strandat 115.787 kb on + strandat 115.788 kb on - strandat 115.798 kb on + strandat 115.814 kb on + strandat 115.814 kb on + strandat 115.828 kb on + strandat 115.830 kb on + strandat 115.831 kb on - strandat 115.885 kb on + strandat 115.886 kb on - strandat 115.886 kb on - strandat 115.903 kb on - strandat 115.925 kb on + strandat 115.925 kb on + strandat 115.926 kb on - strandat 115.926 kb on - strandat 116.015 kb on + strandat 116.015 kb on + strandat 116.015 kb on + strandat 116.015 kb on + strandat 116.015 kb on + strandat 116.016 kb on - strandat 116.051 kb on - strandat 116.051 kb on - strandat 116.058 kb on + strandat 116.433 kb on + strand, within EX28DRAFT_0167at 117.757 kb on + strandat 117.758 kb on - strandat 117.758 kb on - strandat 117.762 kb on - strandat 117.762 kb on - strandat 117.762 kb on - strandat 117.762 kb on - strandat 117.919 kb on - strandat 117.919 kb on - strandat 117.919 kb on - strandat 118.010 kb on + strandat 118.260 kb on - strand, within EX28DRAFT_0169at 118.357 kb on - strand, within EX28DRAFT_0169at 118.357 kb on - strand, within EX28DRAFT_0169at 118.439 kb on + strand, within EX28DRAFT_0169at 118.439 kb on + strand, within EX28DRAFT_0169at 118.497 kb on - strand, within EX28DRAFT_0169at 118.507 kb on - strand, within EX28DRAFT_0169at 118.529 kb on - strand, within EX28DRAFT_0169at 118.532 kb on + strand, within EX28DRAFT_0169at 118.532 kb on + strand, within EX28DRAFT_0169at 118.532 kb on + strand, within EX28DRAFT_0169at 118.533 kb on - strand, within EX28DRAFT_0169at 118.533 kb on - strand, within EX28DRAFT_0169at 118.587 kb on + strand, within EX28DRAFT_0169at 118.724 kb on + strand, within EX28DRAFT_0169at 118.724 kb on + strand, within EX28DRAFT_0169at 118.725 kb on - strand, within EX28DRAFT_0169

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
remove
115,701 + -0.9
115,702 - -0.9
115,726 - +0.4
115,787 + -1.1
115,788 - -2.4
115,798 + -0.9
115,814 + +0.1
115,814 + -0.3
115,828 + +1.3
115,830 + -2.7
115,831 - -0.5
115,885 + -0.9
115,886 - +1.2
115,886 - +0.6
115,903 - -2.7
115,925 + -0.7
115,925 + +1.4
115,926 - -0.4
115,926 - -0.9
116,015 + -0.1
116,015 + +0.7
116,015 + -0.4
116,015 + +0.5
116,015 + +0.8
116,016 - +1.3
116,051 - -1.6
116,051 - +0.2
116,058 + -1.8
116,433 + EX28DRAFT_0167 0.59 -2.1
117,757 + +0.4
117,758 - -0.1
117,758 - -1.0
117,762 - -2.0
117,762 - -1.3
117,762 - +0.0
117,762 - +0.0
117,919 - -3.1
117,919 - +0.0
117,919 - +0.4
118,010 + +0.0
118,260 - EX28DRAFT_0169 0.18 -0.6
118,357 - EX28DRAFT_0169 0.25 +0.3
118,357 - EX28DRAFT_0169 0.25 +0.3
118,439 + EX28DRAFT_0169 0.31 +1.7
118,439 + EX28DRAFT_0169 0.31 -0.5
118,497 - EX28DRAFT_0169 0.35 -0.3
118,507 - EX28DRAFT_0169 0.35 +0.9
118,529 - EX28DRAFT_0169 0.37 +1.0
118,532 + EX28DRAFT_0169 0.37 -0.7
118,532 + EX28DRAFT_0169 0.37 -1.1
118,532 + EX28DRAFT_0169 0.37 +1.1
118,533 - EX28DRAFT_0169 0.37 +0.2
118,533 - EX28DRAFT_0169 0.37 -0.8
118,587 + EX28DRAFT_0169 0.41 +0.8
118,724 + EX28DRAFT_0169 0.51 +0.9
118,724 + EX28DRAFT_0169 0.51 -0.5
118,725 - EX28DRAFT_0169 0.51 +0.2

Or see this region's nucleotide sequence