Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0076

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0074 and EX28DRAFT_0075 overlap by 4 nucleotidesEX28DRAFT_0075 and EX28DRAFT_0076 are separated by 185 nucleotidesEX28DRAFT_0076 and EX28DRAFT_0077 are separated by 15 nucleotides EX28DRAFT_0074: EX28DRAFT_0074 - sigma E regulatory protein, MucB/RseB, at 15,829 to 16,782 _0074 EX28DRAFT_0075: EX28DRAFT_0075 - positive regulator of sigma(E), RseC/MucC, at 16,779 to 17,255 _0075 EX28DRAFT_0076: EX28DRAFT_0076 - elongation factor 4, at 17,441 to 19,240 _0076 EX28DRAFT_0077: EX28DRAFT_0077 - signal peptidase I, bacterial type, at 19,256 to 20,230 _0077 Position (kb) 17 18 19 20Strain fitness (log2 ratio) -2 -1 0 1 2 3at 16.482 kb on + strand, within EX28DRAFT_0074at 16.585 kb on + strand, within EX28DRAFT_0074at 16.618 kb on - strand, within EX28DRAFT_0074at 16.680 kb on + strand, within EX28DRAFT_0074at 16.681 kb on - strand, within EX28DRAFT_0074at 16.761 kb on + strandat 16.761 kb on + strandat 16.857 kb on - strand, within EX28DRAFT_0075at 16.857 kb on - strand, within EX28DRAFT_0075at 16.860 kb on - strand, within EX28DRAFT_0075at 16.902 kb on - strand, within EX28DRAFT_0075at 17.022 kb on + strand, within EX28DRAFT_0075at 17.048 kb on + strand, within EX28DRAFT_0075at 17.048 kb on + strand, within EX28DRAFT_0075at 17.096 kb on + strand, within EX28DRAFT_0075at 17.315 kb on + strandat 17.316 kb on - strandat 17.325 kb on + strandat 17.326 kb on - strandat 17.326 kb on - strandat 17.326 kb on - strandat 17.326 kb on - strandat 17.352 kb on + strandat 17.352 kb on + strandat 17.352 kb on + strandat 17.357 kb on + strandat 17.430 kb on + strandat 17.509 kb on + strandat 17.627 kb on + strand, within EX28DRAFT_0076at 18.094 kb on + strand, within EX28DRAFT_0076at 18.554 kb on + strand, within EX28DRAFT_0076at 18.767 kb on + strand, within EX28DRAFT_0076at 19.048 kb on + strand, within EX28DRAFT_0076at 20.228 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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16,482 + EX28DRAFT_0074 0.68 +0.2
16,585 + EX28DRAFT_0074 0.79 +0.3
16,618 - EX28DRAFT_0074 0.83 -1.1
16,680 + EX28DRAFT_0074 0.89 +0.2
16,681 - EX28DRAFT_0074 0.89 -0.7
16,761 + +0.9
16,761 + -0.4
16,857 - EX28DRAFT_0075 0.16 +0.8
16,857 - EX28DRAFT_0075 0.16 +1.1
16,860 - EX28DRAFT_0075 0.17 -1.8
16,902 - EX28DRAFT_0075 0.26 -0.0
17,022 + EX28DRAFT_0075 0.51 -0.0
17,048 + EX28DRAFT_0075 0.56 +3.6
17,048 + EX28DRAFT_0075 0.56 -0.1
17,096 + EX28DRAFT_0075 0.66 -0.0
17,315 + -0.0
17,316 - +0.1
17,325 + -2.2
17,326 - -0.4
17,326 - +0.6
17,326 - -1.9
17,326 - +0.5
17,352 + +0.1
17,352 + -0.1
17,352 + -0.9
17,357 + -0.2
17,430 + +0.5
17,509 + -2.4
17,627 + EX28DRAFT_0076 0.10 -1.0
18,094 + EX28DRAFT_0076 0.36 +0.2
18,554 + EX28DRAFT_0076 0.62 -0.7
18,767 + EX28DRAFT_0076 0.74 -1.7
19,048 + EX28DRAFT_0076 0.89 -1.1
20,228 + -2.7

Or see this region's nucleotide sequence