Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20830

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20825 and CA264_20830 are separated by 11 nucleotidesCA264_20830 and CA264_20835 are separated by 555 nucleotides CA264_20825: CA264_20825 - hypothetical protein, at 23,719 to 25,344 _20825 CA264_20830: CA264_20830 - hypothetical protein, at 25,356 to 25,697 _20830 CA264_20835: CA264_20835 - hypothetical protein, at 26,253 to 27,875 _20835 Position (kb) 25 26Strain fitness (log2 ratio) -2 -1 0 1 2at 24.405 kb on + strand, within CA264_20825at 24.405 kb on + strand, within CA264_20825at 24.406 kb on - strand, within CA264_20825at 24.409 kb on - strand, within CA264_20825at 24.425 kb on + strand, within CA264_20825at 24.425 kb on + strand, within CA264_20825at 24.436 kb on + strand, within CA264_20825at 24.437 kb on - strand, within CA264_20825at 24.439 kb on - strand, within CA264_20825at 24.448 kb on - strand, within CA264_20825at 24.517 kb on + strand, within CA264_20825at 24.517 kb on + strand, within CA264_20825at 24.517 kb on + strand, within CA264_20825at 24.517 kb on + strand, within CA264_20825at 24.518 kb on - strand, within CA264_20825at 24.518 kb on - strand, within CA264_20825at 24.518 kb on - strand, within CA264_20825at 24.630 kb on - strand, within CA264_20825at 24.649 kb on - strand, within CA264_20825at 24.659 kb on + strand, within CA264_20825at 24.660 kb on - strand, within CA264_20825at 24.706 kb on + strand, within CA264_20825at 24.707 kb on - strand, within CA264_20825at 24.710 kb on + strand, within CA264_20825at 24.710 kb on + strand, within CA264_20825at 24.710 kb on + strand, within CA264_20825at 24.790 kb on + strand, within CA264_20825at 24.850 kb on + strand, within CA264_20825at 24.851 kb on - strand, within CA264_20825at 24.851 kb on - strand, within CA264_20825at 24.851 kb on - strand, within CA264_20825at 24.865 kb on - strand, within CA264_20825at 24.906 kb on - strand, within CA264_20825at 24.968 kb on + strand, within CA264_20825at 24.969 kb on - strand, within CA264_20825at 24.977 kb on + strand, within CA264_20825at 24.977 kb on + strand, within CA264_20825at 24.977 kb on + strand, within CA264_20825at 24.978 kb on - strand, within CA264_20825at 25.033 kb on + strand, within CA264_20825at 25.033 kb on + strand, within CA264_20825at 25.034 kb on - strand, within CA264_20825at 25.063 kb on + strand, within CA264_20825at 25.063 kb on + strand, within CA264_20825at 25.150 kb on + strand, within CA264_20825at 25.300 kb on + strandat 25.332 kb on - strandat 25.345 kb on - strandat 25.349 kb on + strandat 25.397 kb on + strand, within CA264_20830at 25.398 kb on - strand, within CA264_20830at 25.398 kb on - strand, within CA264_20830at 25.436 kb on + strand, within CA264_20830at 25.697 kb on + strandat 25.698 kb on - strandat 25.703 kb on - strandat 25.704 kb on + strandat 25.705 kb on - strandat 25.705 kb on - strandat 25.705 kb on - strandat 25.725 kb on + strandat 25.729 kb on + strandat 25.860 kb on + strandat 25.860 kb on + strandat 25.860 kb on + strandat 25.880 kb on + strandat 25.947 kb on - strandat 25.947 kb on - strandat 25.949 kb on - strandat 25.949 kb on - strandat 25.949 kb on - strandat 25.952 kb on + strandat 25.952 kb on + strandat 25.953 kb on - strandat 25.953 kb on - strandat 26.066 kb on - strandat 26.158 kb on - strandat 26.158 kb on - strandat 26.213 kb on + strandat 26.249 kb on + strandat 26.254 kb on + strandat 26.254 kb on + strandat 26.254 kb on + strandat 26.254 kb on + strandat 26.255 kb on - strandat 26.255 kb on - strandat 26.264 kb on + strandat 26.289 kb on - strandat 26.347 kb on + strandat 26.349 kb on + strandat 26.350 kb on - strandat 26.410 kb on - strandat 26.435 kb on + strand, within CA264_20835at 26.436 kb on - strand, within CA264_20835at 26.437 kb on + strand, within CA264_20835at 26.437 kb on + strand, within CA264_20835at 26.438 kb on - strand, within CA264_20835at 26.486 kb on + strand, within CA264_20835at 26.503 kb on + strand, within CA264_20835at 26.504 kb on - strand, within CA264_20835at 26.504 kb on - strand, within CA264_20835at 26.504 kb on - strand, within CA264_20835at 26.509 kb on - strand, within CA264_20835at 26.546 kb on + strand, within CA264_20835at 26.546 kb on + strand, within CA264_20835at 26.547 kb on - strand, within CA264_20835at 26.547 kb on - strand, within CA264_20835at 26.563 kb on + strand, within CA264_20835at 26.613 kb on + strand, within CA264_20835at 26.614 kb on - strand, within CA264_20835at 26.614 kb on - strand, within CA264_20835

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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24,405 + CA264_20825 0.42 +0.2
24,405 + CA264_20825 0.42 -1.2
24,406 - CA264_20825 0.42 -0.1
24,409 - CA264_20825 0.42 +0.1
24,425 + CA264_20825 0.43 -0.1
24,425 + CA264_20825 0.43 +0.4
24,436 + CA264_20825 0.44 +0.3
24,437 - CA264_20825 0.44 +0.2
24,439 - CA264_20825 0.44 -0.4
24,448 - CA264_20825 0.45 -0.5
24,517 + CA264_20825 0.49 +0.9
24,517 + CA264_20825 0.49 -1.4
24,517 + CA264_20825 0.49 +1.6
24,517 + CA264_20825 0.49 +0.5
24,518 - CA264_20825 0.49 -0.3
24,518 - CA264_20825 0.49 +0.6
24,518 - CA264_20825 0.49 -1.1
24,630 - CA264_20825 0.56 -0.2
24,649 - CA264_20825 0.57 -1.8
24,659 + CA264_20825 0.58 +0.1
24,660 - CA264_20825 0.58 +0.2
24,706 + CA264_20825 0.61 +0.2
24,707 - CA264_20825 0.61 -0.8
24,710 + CA264_20825 0.61 -0.3
24,710 + CA264_20825 0.61 -1.0
24,710 + CA264_20825 0.61 -1.1
24,790 + CA264_20825 0.66 -0.7
24,850 + CA264_20825 0.70 -1.0
24,851 - CA264_20825 0.70 -0.8
24,851 - CA264_20825 0.70 +0.7
24,851 - CA264_20825 0.70 -0.2
24,865 - CA264_20825 0.70 -1.3
24,906 - CA264_20825 0.73 +0.8
24,968 + CA264_20825 0.77 -0.2
24,969 - CA264_20825 0.77 -2.1
24,977 + CA264_20825 0.77 +0.6
24,977 + CA264_20825 0.77 +0.4
24,977 + CA264_20825 0.77 -0.1
24,978 - CA264_20825 0.77 -0.6
25,033 + CA264_20825 0.81 +0.2
25,033 + CA264_20825 0.81 +1.6
25,034 - CA264_20825 0.81 -1.4
25,063 + CA264_20825 0.83 -0.0
25,063 + CA264_20825 0.83 +0.3
25,150 + CA264_20825 0.88 +0.2
25,300 + -0.1
25,332 - -1.7
25,345 - -0.3
25,349 + -0.0
25,397 + CA264_20830 0.12 -0.1
25,398 - CA264_20830 0.12 -0.4
25,398 - CA264_20830 0.12 -1.5
25,436 + CA264_20830 0.23 -0.4
25,697 + +0.1
25,698 - -1.0
25,703 - +0.0
25,704 + +1.2
25,705 - -0.3
25,705 - -2.0
25,705 - -0.3
25,725 + -0.3
25,729 + +1.2
25,860 + -0.1
25,860 + -0.0
25,860 + +1.1
25,880 + +0.2
25,947 - -0.2
25,947 - -0.5
25,949 - +0.1
25,949 - -0.4
25,949 - +0.2
25,952 + -0.5
25,952 + +0.3
25,953 - +0.9
25,953 - -0.0
26,066 - -0.2
26,158 - +0.4
26,158 - -1.3
26,213 + -0.5
26,249 + +0.3
26,254 + -0.6
26,254 + +1.3
26,254 + -0.6
26,254 + +1.6
26,255 - +2.0
26,255 - -0.3
26,264 + -1.0
26,289 - -0.1
26,347 + -0.3
26,349 + -2.4
26,350 - -0.0
26,410 - -0.1
26,435 + CA264_20835 0.11 -0.2
26,436 - CA264_20835 0.11 -1.2
26,437 + CA264_20835 0.11 +0.3
26,437 + CA264_20835 0.11 +0.6
26,438 - CA264_20835 0.11 -0.1
26,486 + CA264_20835 0.14 +0.1
26,503 + CA264_20835 0.15 +1.3
26,504 - CA264_20835 0.15 -0.0
26,504 - CA264_20835 0.15 -1.6
26,504 - CA264_20835 0.15 +0.3
26,509 - CA264_20835 0.16 -0.0
26,546 + CA264_20835 0.18 -0.9
26,546 + CA264_20835 0.18 -0.0
26,547 - CA264_20835 0.18 +2.3
26,547 - CA264_20835 0.18 -0.4
26,563 + CA264_20835 0.19 -0.6
26,613 + CA264_20835 0.22 -1.3
26,614 - CA264_20835 0.22 +0.2
26,614 - CA264_20835 0.22 +0.1

Or see this region's nucleotide sequence