Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20245

Experiment: m.b. Chloride 750 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_20235 and CA264_20240 are separated by 120 nucleotidesCA264_20240 and CA264_20245 overlap by 26 nucleotidesCA264_20245 and CA264_20250 are separated by 4 nucleotidesCA264_20250 and CA264_20255 are separated by 64 nucleotides CA264_20235: CA264_20235 - transcriptional regulator, at 4,669,767 to 4,670,159 _20235 CA264_20240: CA264_20240 - hypothetical protein, at 4,670,280 to 4,670,981 _20240 CA264_20245: CA264_20245 - hypothetical protein, at 4,670,956 to 4,671,810 _20245 CA264_20250: CA264_20250 - transcriptional regulator, at 4,671,815 to 4,672,255 _20250 CA264_20255: CA264_20255 - hypothetical protein, at 4,672,320 to 4,672,859 _20255 Position (kb) 4670 4671 4672Strain fitness (log2 ratio) -2 -1 0 1 2at 4670.034 kb on + strand, within CA264_20235at 4670.034 kb on + strand, within CA264_20235at 4670.035 kb on - strand, within CA264_20235at 4670.035 kb on - strand, within CA264_20235at 4670.124 kb on - strandat 4670.132 kb on + strandat 4670.133 kb on - strandat 4670.162 kb on - strandat 4670.171 kb on - strandat 4670.187 kb on + strandat 4670.214 kb on - strandat 4670.261 kb on + strandat 4670.316 kb on - strandat 4670.358 kb on - strand, within CA264_20240at 4670.378 kb on + strand, within CA264_20240at 4670.378 kb on + strand, within CA264_20240at 4670.379 kb on - strand, within CA264_20240at 4670.388 kb on + strand, within CA264_20240at 4670.401 kb on + strand, within CA264_20240at 4670.403 kb on + strand, within CA264_20240at 4670.403 kb on + strand, within CA264_20240at 4670.404 kb on - strand, within CA264_20240at 4670.440 kb on + strand, within CA264_20240at 4670.628 kb on + strand, within CA264_20240at 4670.629 kb on - strand, within CA264_20240at 4670.659 kb on + strand, within CA264_20240at 4670.659 kb on + strand, within CA264_20240at 4670.660 kb on - strand, within CA264_20240at 4670.660 kb on - strand, within CA264_20240at 4670.664 kb on + strand, within CA264_20240at 4670.664 kb on + strand, within CA264_20240at 4670.665 kb on - strand, within CA264_20240at 4670.769 kb on + strand, within CA264_20240at 4670.812 kb on - strand, within CA264_20240at 4670.818 kb on + strand, within CA264_20240at 4670.819 kb on - strand, within CA264_20240at 4670.829 kb on + strand, within CA264_20240at 4670.830 kb on - strand, within CA264_20240at 4670.862 kb on + strand, within CA264_20240at 4670.866 kb on - strand, within CA264_20240at 4670.866 kb on - strand, within CA264_20240at 4670.900 kb on - strand, within CA264_20240at 4670.948 kb on + strandat 4670.948 kb on + strandat 4671.032 kb on + strandat 4671.127 kb on + strand, within CA264_20245at 4671.127 kb on + strand, within CA264_20245at 4671.146 kb on + strand, within CA264_20245at 4671.147 kb on - strand, within CA264_20245at 4671.286 kb on + strand, within CA264_20245at 4671.320 kb on - strand, within CA264_20245at 4671.320 kb on - strand, within CA264_20245at 4671.330 kb on + strand, within CA264_20245at 4671.341 kb on - strand, within CA264_20245at 4671.409 kb on + strand, within CA264_20245at 4671.410 kb on - strand, within CA264_20245at 4671.430 kb on + strand, within CA264_20245at 4671.431 kb on - strand, within CA264_20245at 4671.431 kb on - strand, within CA264_20245at 4671.475 kb on - strand, within CA264_20245at 4671.512 kb on - strand, within CA264_20245at 4671.627 kb on + strand, within CA264_20245at 4671.685 kb on + strand, within CA264_20245at 4671.686 kb on - strand, within CA264_20245at 4671.686 kb on - strand, within CA264_20245at 4671.705 kb on - strand, within CA264_20245at 4671.726 kb on - strandat 4671.756 kb on + strandat 4671.756 kb on + strandat 4671.770 kb on + strandat 4671.797 kb on + strandat 4671.803 kb on + strandat 4671.804 kb on - strandat 4671.808 kb on + strandat 4671.809 kb on - strandat 4671.809 kb on - strandat 4671.809 kb on - strandat 4671.809 kb on - strandat 4671.814 kb on + strandat 4671.826 kb on - strandat 4671.826 kb on - strandat 4671.831 kb on + strandat 4671.888 kb on + strand, within CA264_20250at 4671.963 kb on + strand, within CA264_20250at 4671.963 kb on + strand, within CA264_20250at 4671.963 kb on + strand, within CA264_20250at 4671.964 kb on - strand, within CA264_20250at 4672.019 kb on - strand, within CA264_20250at 4672.022 kb on - strand, within CA264_20250at 4672.039 kb on + strand, within CA264_20250at 4672.039 kb on + strand, within CA264_20250at 4672.040 kb on - strand, within CA264_20250at 4672.104 kb on + strand, within CA264_20250at 4672.105 kb on - strand, within CA264_20250at 4672.105 kb on - strand, within CA264_20250at 4672.159 kb on - strand, within CA264_20250at 4672.167 kb on + strand, within CA264_20250at 4672.167 kb on + strand, within CA264_20250at 4672.191 kb on - strand, within CA264_20250at 4672.243 kb on - strandat 4672.253 kb on + strandat 4672.282 kb on - strandat 4672.312 kb on + strandat 4672.312 kb on + strandat 4672.313 kb on - strandat 4672.313 kb on - strandat 4672.313 kb on - strandat 4672.313 kb on - strandat 4672.316 kb on + strandat 4672.317 kb on - strandat 4672.321 kb on + strandat 4672.335 kb on + strandat 4672.457 kb on - strand, within CA264_20255at 4672.457 kb on - strand, within CA264_20255at 4672.481 kb on + strand, within CA264_20255at 4672.482 kb on - strand, within CA264_20255at 4672.509 kb on + strand, within CA264_20255at 4672.510 kb on - strand, within CA264_20255at 4672.591 kb on + strand, within CA264_20255at 4672.628 kb on + strand, within CA264_20255at 4672.658 kb on - strand, within CA264_20255at 4672.729 kb on + strand, within CA264_20255at 4672.730 kb on - strand, within CA264_20255at 4672.730 kb on - strand, within CA264_20255

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
remove
4,670,034 + CA264_20235 0.68 -0.8
4,670,034 + CA264_20235 0.68 -0.1
4,670,035 - CA264_20235 0.68 +0.6
4,670,035 - CA264_20235 0.68 -0.2
4,670,124 - +0.2
4,670,132 + +0.2
4,670,133 - +1.9
4,670,162 - -0.2
4,670,171 - -0.8
4,670,187 + +0.8
4,670,214 - -0.3
4,670,261 + -0.2
4,670,316 - -0.6
4,670,358 - CA264_20240 0.11 +1.2
4,670,378 + CA264_20240 0.14 +0.2
4,670,378 + CA264_20240 0.14 -1.1
4,670,379 - CA264_20240 0.14 +0.0
4,670,388 + CA264_20240 0.15 +0.1
4,670,401 + CA264_20240 0.17 -0.2
4,670,403 + CA264_20240 0.18 -0.1
4,670,403 + CA264_20240 0.18 -0.1
4,670,404 - CA264_20240 0.18 +0.9
4,670,440 + CA264_20240 0.23 -1.4
4,670,628 + CA264_20240 0.50 +1.1
4,670,629 - CA264_20240 0.50 -0.4
4,670,659 + CA264_20240 0.54 -0.6
4,670,659 + CA264_20240 0.54 -0.2
4,670,660 - CA264_20240 0.54 -0.1
4,670,660 - CA264_20240 0.54 +0.0
4,670,664 + CA264_20240 0.55 +1.0
4,670,664 + CA264_20240 0.55 -0.8
4,670,665 - CA264_20240 0.55 -0.1
4,670,769 + CA264_20240 0.70 -0.8
4,670,812 - CA264_20240 0.76 -1.5
4,670,818 + CA264_20240 0.77 -0.4
4,670,819 - CA264_20240 0.77 +2.2
4,670,829 + CA264_20240 0.78 -0.3
4,670,830 - CA264_20240 0.78 +0.0
4,670,862 + CA264_20240 0.83 -0.0
4,670,866 - CA264_20240 0.83 -0.9
4,670,866 - CA264_20240 0.83 +0.0
4,670,900 - CA264_20240 0.88 +0.5
4,670,948 + -0.0
4,670,948 + +0.0
4,671,032 + -1.4
4,671,127 + CA264_20245 0.20 +0.0
4,671,127 + CA264_20245 0.20 +1.2
4,671,146 + CA264_20245 0.22 +0.6
4,671,147 - CA264_20245 0.22 +0.7
4,671,286 + CA264_20245 0.39 -0.1
4,671,320 - CA264_20245 0.43 +0.0
4,671,320 - CA264_20245 0.43 +0.1
4,671,330 + CA264_20245 0.44 +0.8
4,671,341 - CA264_20245 0.45 -0.0
4,671,409 + CA264_20245 0.53 -0.2
4,671,410 - CA264_20245 0.53 +1.9
4,671,430 + CA264_20245 0.55 +1.8
4,671,431 - CA264_20245 0.56 -0.1
4,671,431 - CA264_20245 0.56 -0.8
4,671,475 - CA264_20245 0.61 -1.0
4,671,512 - CA264_20245 0.65 -1.0
4,671,627 + CA264_20245 0.78 +2.0
4,671,685 + CA264_20245 0.85 -0.2
4,671,686 - CA264_20245 0.85 +1.4
4,671,686 - CA264_20245 0.85 +0.0
4,671,705 - CA264_20245 0.88 -0.0
4,671,726 - +0.1
4,671,756 + +0.3
4,671,756 + -0.9
4,671,770 + -1.0
4,671,797 + -1.3
4,671,803 + -0.9
4,671,804 - -1.0
4,671,808 + -0.1
4,671,809 - +0.4
4,671,809 - +1.2
4,671,809 - -0.6
4,671,809 - +0.0
4,671,814 + -0.1
4,671,826 - -0.1
4,671,826 - +0.9
4,671,831 + -0.3
4,671,888 + CA264_20250 0.17 +0.8
4,671,963 + CA264_20250 0.34 +0.0
4,671,963 + CA264_20250 0.34 -0.2
4,671,963 + CA264_20250 0.34 +2.5
4,671,964 - CA264_20250 0.34 +0.7
4,672,019 - CA264_20250 0.46 +0.1
4,672,022 - CA264_20250 0.47 +0.8
4,672,039 + CA264_20250 0.51 +0.3
4,672,039 + CA264_20250 0.51 -0.1
4,672,040 - CA264_20250 0.51 +0.6
4,672,104 + CA264_20250 0.66 -0.2
4,672,105 - CA264_20250 0.66 -0.0
4,672,105 - CA264_20250 0.66 +0.3
4,672,159 - CA264_20250 0.78 +0.3
4,672,167 + CA264_20250 0.80 -0.4
4,672,167 + CA264_20250 0.80 -0.0
4,672,191 - CA264_20250 0.85 +1.3
4,672,243 - -1.1
4,672,253 + -2.4
4,672,282 - -0.6
4,672,312 + +0.2
4,672,312 + +0.4
4,672,313 - +0.1
4,672,313 - +0.4
4,672,313 - +1.5
4,672,313 - -0.3
4,672,316 + -1.5
4,672,317 - -0.3
4,672,321 + +0.2
4,672,335 + +0.1
4,672,457 - CA264_20255 0.25 -0.1
4,672,457 - CA264_20255 0.25 -2.5
4,672,481 + CA264_20255 0.30 -0.6
4,672,482 - CA264_20255 0.30 -0.1
4,672,509 + CA264_20255 0.35 +0.0
4,672,510 - CA264_20255 0.35 +0.2
4,672,591 + CA264_20255 0.50 -1.2
4,672,628 + CA264_20255 0.57 +1.4
4,672,658 - CA264_20255 0.63 +0.0
4,672,729 + CA264_20255 0.76 -0.1
4,672,730 - CA264_20255 0.76 -0.4
4,672,730 - CA264_20255 0.76 -0.3

Or see this region's nucleotide sequence