Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19490

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19480 and CA264_19485 are separated by 72 nucleotidesCA264_19485 and CA264_19490 are separated by 76 nucleotidesCA264_19490 and CA264_19495 are separated by 22 nucleotides CA264_19480: CA264_19480 - DNA-directed RNA polymerase subunit alpha, at 4,501,264 to 4,502,253 _19480 CA264_19485: CA264_19485 - 50S ribosomal protein L17, at 4,502,326 to 4,502,856 _19485 CA264_19490: CA264_19490 - carbamoyl phosphate synthase small subunit, at 4,502,933 to 4,504,048 _19490 CA264_19495: CA264_19495 - phosphopyruvate hydratase, at 4,504,071 to 4,505,348 _19495 Position (kb) 4502 4503 4504 4505Strain fitness (log2 ratio) -1 0 1 2at 4502.944 kb on + strandat 4502.988 kb on - strandat 4503.087 kb on - strand, within CA264_19490at 4503.381 kb on + strand, within CA264_19490at 4503.426 kb on + strand, within CA264_19490at 4503.426 kb on + strand, within CA264_19490at 4503.451 kb on - strand, within CA264_19490at 4503.523 kb on + strand, within CA264_19490at 4503.557 kb on + strand, within CA264_19490at 4503.670 kb on - strand, within CA264_19490at 4503.688 kb on + strand, within CA264_19490at 4503.689 kb on - strand, within CA264_19490at 4503.689 kb on - strand, within CA264_19490at 4503.746 kb on + strand, within CA264_19490at 4503.747 kb on - strand, within CA264_19490at 4503.904 kb on + strand, within CA264_19490at 4503.905 kb on - strand, within CA264_19490at 4503.956 kb on + strandat 4504.034 kb on - strandat 4504.044 kb on + strandat 4504.044 kb on + strandat 4504.045 kb on - strandat 4504.046 kb on + strandat 4504.051 kb on - strandat 4504.056 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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4,502,944 + +0.1
4,502,988 - -1.2
4,503,087 - CA264_19490 0.14 -1.4
4,503,381 + CA264_19490 0.40 +0.0
4,503,426 + CA264_19490 0.44 -1.7
4,503,426 + CA264_19490 0.44 -0.6
4,503,451 - CA264_19490 0.46 -0.6
4,503,523 + CA264_19490 0.53 -0.6
4,503,557 + CA264_19490 0.56 +0.7
4,503,670 - CA264_19490 0.66 -0.7
4,503,688 + CA264_19490 0.68 +0.1
4,503,689 - CA264_19490 0.68 -0.3
4,503,689 - CA264_19490 0.68 +1.4
4,503,746 + CA264_19490 0.73 -0.3
4,503,747 - CA264_19490 0.73 -0.3
4,503,904 + CA264_19490 0.87 +0.3
4,503,905 - CA264_19490 0.87 -1.2
4,503,956 + -0.5
4,504,034 - -0.1
4,504,044 + -0.6
4,504,044 + +0.0
4,504,045 - +0.4
4,504,046 + +2.0
4,504,051 - -1.0
4,504,056 + -0.5

Or see this region's nucleotide sequence