Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19190

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19185 and CA264_19190 are separated by 130 nucleotidesCA264_19190 and CA264_19195 are separated by 29 nucleotides CA264_19185: CA264_19185 - adenosylhomocysteinase, at 4,455,956 to 4,457,263 _19185 CA264_19190: CA264_19190 - DNA-binding response regulator, at 4,457,394 to 4,458,140 _19190 CA264_19195: CA264_19195 - hypothetical protein, at 4,458,170 to 4,461,142 _19195 Position (kb) 4457 4458 4459Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4457.262 kb on - strandat 4457.284 kb on + strandat 4457.369 kb on + strandat 4457.381 kb on + strandat 4457.381 kb on + strandat 4457.381 kb on + strandat 4457.382 kb on - strandat 4457.397 kb on + strandat 4457.397 kb on + strandat 4457.399 kb on + strandat 4457.399 kb on + strandat 4457.399 kb on + strandat 4457.400 kb on - strandat 4457.400 kb on - strandat 4457.411 kb on + strandat 4457.411 kb on + strandat 4457.412 kb on - strandat 4457.431 kb on + strandat 4457.432 kb on - strandat 4457.432 kb on - strandat 4457.493 kb on + strand, within CA264_19190at 4457.494 kb on - strand, within CA264_19190at 4457.494 kb on - strand, within CA264_19190at 4457.494 kb on - strand, within CA264_19190at 4457.555 kb on + strand, within CA264_19190at 4457.555 kb on + strand, within CA264_19190at 4457.555 kb on + strand, within CA264_19190at 4457.555 kb on + strand, within CA264_19190at 4457.555 kb on + strand, within CA264_19190at 4457.556 kb on - strand, within CA264_19190at 4457.556 kb on - strand, within CA264_19190at 4457.583 kb on + strand, within CA264_19190at 4457.584 kb on - strand, within CA264_19190at 4457.590 kb on + strand, within CA264_19190at 4457.591 kb on - strand, within CA264_19190at 4457.612 kb on + strand, within CA264_19190at 4457.620 kb on + strand, within CA264_19190at 4457.620 kb on + strand, within CA264_19190at 4457.682 kb on + strand, within CA264_19190at 4457.698 kb on + strand, within CA264_19190at 4457.709 kb on + strand, within CA264_19190at 4457.769 kb on - strand, within CA264_19190at 4457.902 kb on + strand, within CA264_19190at 4457.903 kb on - strand, within CA264_19190at 4457.907 kb on - strand, within CA264_19190at 4457.975 kb on + strand, within CA264_19190at 4457.976 kb on - strand, within CA264_19190at 4458.021 kb on + strand, within CA264_19190at 4458.022 kb on - strand, within CA264_19190at 4458.022 kb on - strand, within CA264_19190at 4458.022 kb on - strand, within CA264_19190at 4458.022 kb on - strand, within CA264_19190at 4458.023 kb on + strand, within CA264_19190at 4458.023 kb on + strand, within CA264_19190at 4458.023 kb on + strand, within CA264_19190at 4458.024 kb on - strand, within CA264_19190at 4458.024 kb on - strand, within CA264_19190at 4458.042 kb on + strand, within CA264_19190at 4458.043 kb on - strand, within CA264_19190at 4458.043 kb on - strand, within CA264_19190at 4458.147 kb on - strandat 4458.261 kb on - strandat 4458.263 kb on + strandat 4458.264 kb on - strandat 4458.269 kb on - strandat 4458.351 kb on + strandat 4458.418 kb on - strandat 4458.438 kb on - strandat 4458.476 kb on + strand, within CA264_19195at 4458.477 kb on - strand, within CA264_19195at 4458.477 kb on - strand, within CA264_19195at 4458.488 kb on + strand, within CA264_19195at 4458.526 kb on + strand, within CA264_19195at 4458.527 kb on - strand, within CA264_19195at 4458.537 kb on + strand, within CA264_19195at 4458.574 kb on - strand, within CA264_19195at 4458.590 kb on - strand, within CA264_19195at 4458.637 kb on + strand, within CA264_19195at 4458.668 kb on + strand, within CA264_19195at 4458.668 kb on + strand, within CA264_19195at 4458.668 kb on + strand, within CA264_19195at 4458.668 kb on + strand, within CA264_19195at 4458.669 kb on - strand, within CA264_19195at 4458.922 kb on + strand, within CA264_19195at 4458.923 kb on - strand, within CA264_19195at 4458.966 kb on + strand, within CA264_19195at 4459.111 kb on - strand, within CA264_19195at 4459.111 kb on - strand, within CA264_19195at 4459.111 kb on - strand, within CA264_19195at 4459.111 kb on - strand, within CA264_19195at 4459.114 kb on + strand, within CA264_19195at 4459.114 kb on + strand, within CA264_19195at 4459.117 kb on - strand, within CA264_19195at 4459.117 kb on - strand, within CA264_19195at 4459.122 kb on - strand, within CA264_19195

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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4,457,262 - +0.3
4,457,284 + -0.5
4,457,369 + +0.6
4,457,381 + +0.2
4,457,381 + +0.7
4,457,381 + -1.5
4,457,382 - -0.1
4,457,397 + -0.9
4,457,397 + -0.1
4,457,399 + +0.2
4,457,399 + -0.1
4,457,399 + -0.2
4,457,400 - -0.1
4,457,400 - -0.2
4,457,411 + -0.4
4,457,411 + -0.3
4,457,412 - +0.1
4,457,431 + +1.9
4,457,432 - +0.2
4,457,432 - -0.0
4,457,493 + CA264_19190 0.13 +0.5
4,457,494 - CA264_19190 0.13 +0.0
4,457,494 - CA264_19190 0.13 +0.2
4,457,494 - CA264_19190 0.13 -0.6
4,457,555 + CA264_19190 0.22 +0.2
4,457,555 + CA264_19190 0.22 +0.1
4,457,555 + CA264_19190 0.22 -1.6
4,457,555 + CA264_19190 0.22 -1.2
4,457,555 + CA264_19190 0.22 -0.1
4,457,556 - CA264_19190 0.22 -0.3
4,457,556 - CA264_19190 0.22 -0.1
4,457,583 + CA264_19190 0.25 +0.4
4,457,584 - CA264_19190 0.25 -0.5
4,457,590 + CA264_19190 0.26 +0.0
4,457,591 - CA264_19190 0.26 +0.8
4,457,612 + CA264_19190 0.29 -4.5
4,457,620 + CA264_19190 0.30 +1.9
4,457,620 + CA264_19190 0.30 -0.3
4,457,682 + CA264_19190 0.39 -0.3
4,457,698 + CA264_19190 0.41 +0.3
4,457,709 + CA264_19190 0.42 +0.1
4,457,769 - CA264_19190 0.50 -0.7
4,457,902 + CA264_19190 0.68 -0.2
4,457,903 - CA264_19190 0.68 +0.9
4,457,907 - CA264_19190 0.69 -0.1
4,457,975 + CA264_19190 0.78 +0.9
4,457,976 - CA264_19190 0.78 -0.4
4,458,021 + CA264_19190 0.84 -1.2
4,458,022 - CA264_19190 0.84 -0.5
4,458,022 - CA264_19190 0.84 -0.3
4,458,022 - CA264_19190 0.84 -0.6
4,458,022 - CA264_19190 0.84 -2.2
4,458,023 + CA264_19190 0.84 +0.3
4,458,023 + CA264_19190 0.84 +0.2
4,458,023 + CA264_19190 0.84 +0.0
4,458,024 - CA264_19190 0.84 -1.5
4,458,024 - CA264_19190 0.84 -0.3
4,458,042 + CA264_19190 0.87 -0.8
4,458,043 - CA264_19190 0.87 -0.9
4,458,043 - CA264_19190 0.87 +1.5
4,458,147 - -0.3
4,458,261 - +1.6
4,458,263 + +0.8
4,458,264 - +1.4
4,458,269 - +1.7
4,458,351 + -0.2
4,458,418 - +0.2
4,458,438 - +1.2
4,458,476 + CA264_19195 0.10 +0.9
4,458,477 - CA264_19195 0.10 +2.8
4,458,477 - CA264_19195 0.10 +2.2
4,458,488 + CA264_19195 0.11 +0.6
4,458,526 + CA264_19195 0.12 -0.5
4,458,527 - CA264_19195 0.12 +1.0
4,458,537 + CA264_19195 0.12 +0.3
4,458,574 - CA264_19195 0.14 +1.6
4,458,590 - CA264_19195 0.14 +0.8
4,458,637 + CA264_19195 0.16 +0.2
4,458,668 + CA264_19195 0.17 +0.1
4,458,668 + CA264_19195 0.17 +0.4
4,458,668 + CA264_19195 0.17 -0.2
4,458,668 + CA264_19195 0.17 -0.1
4,458,669 - CA264_19195 0.17 +0.7
4,458,922 + CA264_19195 0.25 +0.5
4,458,923 - CA264_19195 0.25 +1.3
4,458,966 + CA264_19195 0.27 +0.4
4,459,111 - CA264_19195 0.32 +1.0
4,459,111 - CA264_19195 0.32 +1.1
4,459,111 - CA264_19195 0.32 +0.5
4,459,111 - CA264_19195 0.32 -0.1
4,459,114 + CA264_19195 0.32 -0.4
4,459,114 + CA264_19195 0.32 +0.6
4,459,117 - CA264_19195 0.32 +0.7
4,459,117 - CA264_19195 0.32 +1.1
4,459,122 - CA264_19195 0.32 +0.1

Or see this region's nucleotide sequence