Experiment: m.b. Chloride 750 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18185 and CA264_18190 are separated by 95 nucleotides CA264_18190 and CA264_18195 are separated by 16 nucleotides CA264_18195 and CA264_18200 are separated by 187 nucleotides
CA264_18185: CA264_18185 - homogentisate 1,2-dioxygenase, at 4,228,929 to 4,230,134
_18185
CA264_18190: CA264_18190 - hypothetical protein, at 4,230,230 to 4,230,757
_18190
CA264_18195: CA264_18195 - chaperonin, at 4,230,774 to 4,231,151
_18195
CA264_18200: CA264_18200 - T9SS C-terminal target domain-containing protein, at 4,231,339 to 4,235,103
_18200
Position (kb)
4230
4231
4232 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4229.865 kb on + strand, within CA264_18185 at 4229.866 kb on - strand, within CA264_18185 at 4229.868 kb on + strand, within CA264_18185 at 4229.885 kb on + strand, within CA264_18185 at 4230.000 kb on + strand, within CA264_18185 at 4230.001 kb on - strand, within CA264_18185 at 4230.073 kb on - strand at 4230.123 kb on - strand at 4230.123 kb on - strand at 4230.152 kb on - strand at 4230.207 kb on + strand at 4230.208 kb on - strand at 4230.216 kb on + strand at 4230.218 kb on + strand at 4230.270 kb on + strand at 4230.361 kb on - strand, within CA264_18190 at 4230.523 kb on + strand, within CA264_18190 at 4230.524 kb on - strand, within CA264_18190 at 4230.532 kb on + strand, within CA264_18190 at 4230.533 kb on + strand, within CA264_18190 at 4230.534 kb on - strand, within CA264_18190 at 4230.595 kb on + strand, within CA264_18190 at 4230.598 kb on + strand, within CA264_18190 at 4230.641 kb on + strand, within CA264_18190 at 4230.642 kb on - strand, within CA264_18190 at 4230.659 kb on + strand, within CA264_18190 at 4230.659 kb on + strand, within CA264_18190 at 4230.660 kb on - strand, within CA264_18190 at 4230.709 kb on + strand at 4230.764 kb on + strand at 4230.764 kb on + strand at 4230.764 kb on + strand at 4230.764 kb on + strand at 4230.764 kb on + strand at 4230.765 kb on - strand at 4230.765 kb on - strand at 4230.765 kb on - strand at 4230.769 kb on + strand at 4230.921 kb on + strand, within CA264_18195 at 4230.922 kb on - strand, within CA264_18195 at 4231.011 kb on + strand, within CA264_18195 at 4231.012 kb on - strand, within CA264_18195 at 4231.081 kb on - strand, within CA264_18195 at 4231.096 kb on - strand, within CA264_18195 at 4231.163 kb on - strand at 4231.312 kb on + strand at 4231.313 kb on - strand at 4231.401 kb on - strand at 4231.625 kb on + strand at 4231.626 kb on - strand at 4231.629 kb on + strand at 4231.629 kb on + strand at 4231.666 kb on - strand at 4231.682 kb on + strand at 4231.683 kb on - strand at 4231.836 kb on + strand, within CA264_18200 at 4231.877 kb on - strand, within CA264_18200 at 4231.896 kb on - strand, within CA264_18200 at 4231.896 kb on - strand, within CA264_18200 at 4231.899 kb on - strand, within CA264_18200 at 4231.901 kb on + strand, within CA264_18200 at 4231.901 kb on + strand, within CA264_18200 at 4231.901 kb on + strand, within CA264_18200 at 4231.901 kb on + strand, within CA264_18200 at 4232.036 kb on + strand, within CA264_18200 at 4232.036 kb on + strand, within CA264_18200 at 4232.036 kb on + strand, within CA264_18200 at 4232.037 kb on - strand, within CA264_18200 at 4232.037 kb on - strand, within CA264_18200 at 4232.037 kb on - strand, within CA264_18200 at 4232.070 kb on - strand, within CA264_18200 at 4232.122 kb on + strand, within CA264_18200 at 4232.122 kb on + strand, within CA264_18200 at 4232.122 kb on + strand, within CA264_18200 at 4232.141 kb on - strand, within CA264_18200
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM remove 4,229,865 + CA264_18185 0.78 -0.1 4,229,866 - CA264_18185 0.78 +2.6 4,229,868 + CA264_18185 0.78 -0.9 4,229,885 + CA264_18185 0.79 +1.3 4,230,000 + CA264_18185 0.89 -0.3 4,230,001 - CA264_18185 0.89 -0.1 4,230,073 - +1.7 4,230,123 - +0.1 4,230,123 - -0.8 4,230,152 - +1.6 4,230,207 + +0.3 4,230,208 - +1.0 4,230,216 + +0.9 4,230,218 + -0.3 4,230,270 + +0.3 4,230,361 - CA264_18190 0.25 -0.1 4,230,523 + CA264_18190 0.55 -0.1 4,230,524 - CA264_18190 0.56 -1.6 4,230,532 + CA264_18190 0.57 -0.0 4,230,533 + CA264_18190 0.57 +0.0 4,230,534 - CA264_18190 0.58 +0.7 4,230,595 + CA264_18190 0.69 -0.2 4,230,598 + CA264_18190 0.70 -0.9 4,230,641 + CA264_18190 0.78 -1.3 4,230,642 - CA264_18190 0.78 +0.1 4,230,659 + CA264_18190 0.81 -1.4 4,230,659 + CA264_18190 0.81 -0.2 4,230,660 - CA264_18190 0.81 -0.9 4,230,709 + +0.4 4,230,764 + -0.2 4,230,764 + +1.8 4,230,764 + -0.6 4,230,764 + -1.9 4,230,764 + -0.5 4,230,765 - -0.4 4,230,765 - -0.8 4,230,765 - -0.3 4,230,769 + +1.0 4,230,921 + CA264_18195 0.39 +0.2 4,230,922 - CA264_18195 0.39 +1.0 4,231,011 + CA264_18195 0.63 +0.0 4,231,012 - CA264_18195 0.63 -0.3 4,231,081 - CA264_18195 0.81 +1.9 4,231,096 - CA264_18195 0.85 -1.1 4,231,163 - +0.6 4,231,312 + -0.6 4,231,313 - +0.1 4,231,401 - +0.6 4,231,625 + -1.3 4,231,626 - +0.6 4,231,629 + +0.7 4,231,629 + -0.0 4,231,666 - +1.0 4,231,682 + +0.4 4,231,683 - -0.1 4,231,836 + CA264_18200 0.13 -0.9 4,231,877 - CA264_18200 0.14 +1.1 4,231,896 - CA264_18200 0.15 +0.0 4,231,896 - CA264_18200 0.15 +0.1 4,231,899 - CA264_18200 0.15 -0.9 4,231,901 + CA264_18200 0.15 +0.9 4,231,901 + CA264_18200 0.15 +1.1 4,231,901 + CA264_18200 0.15 -0.9 4,231,901 + CA264_18200 0.15 -0.6 4,232,036 + CA264_18200 0.19 +0.6 4,232,036 + CA264_18200 0.19 -0.1 4,232,036 + CA264_18200 0.19 -0.7 4,232,037 - CA264_18200 0.19 -0.2 4,232,037 - CA264_18200 0.19 -0.2 4,232,037 - CA264_18200 0.19 -0.2 4,232,070 - CA264_18200 0.19 -1.3 4,232,122 + CA264_18200 0.21 -0.2 4,232,122 + CA264_18200 0.21 +0.8 4,232,122 + CA264_18200 0.21 -0.3 4,232,141 - CA264_18200 0.21 +0.3
Or see this region's nucleotide sequence