Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17790

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17775 and CA264_17780 are separated by 15 nucleotidesCA264_17780 and CA264_17785 are separated by 26 nucleotidesCA264_17785 and CA264_17790 are separated by 41 nucleotidesCA264_17790 and CA264_17795 overlap by 1 nucleotidesCA264_17795 and CA264_17800 are separated by 185 nucleotidesCA264_17800 and CA264_17805 are separated by 137 nucleotides CA264_17775: CA264_17775 - isocitrate dehydrogenase, at 4,135,204 to 4,136,202 _17775 CA264_17780: CA264_17780 - hypothetical protein, at 4,136,218 to 4,136,754 _17780 CA264_17785: CA264_17785 - preprotein translocase subunit YajC, at 4,136,781 to 4,137,086 _17785 CA264_17790: CA264_17790 - hypothetical protein, at 4,137,128 to 4,138,066 _17790 CA264_17795: CA264_17795 - dephospho-CoA kinase, at 4,138,066 to 4,138,662 _17795 CA264_17800: CA264_17800 - tRNA-Val, at 4,138,848 to 4,138,922 _17800 CA264_17805: CA264_17805 - tRNA-Val, at 4,139,060 to 4,139,137 _17805 Position (kb) 4137 4138 4139Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4136.204 kb on + strandat 4136.210 kb on - strandat 4136.215 kb on - strandat 4136.215 kb on - strandat 4136.215 kb on - strandat 4136.255 kb on + strandat 4136.429 kb on - strand, within CA264_17780at 4136.429 kb on - strand, within CA264_17780at 4136.462 kb on + strand, within CA264_17780at 4136.637 kb on + strand, within CA264_17780at 4136.644 kb on - strand, within CA264_17780at 4136.682 kb on - strand, within CA264_17780at 4136.773 kb on + strandat 4136.786 kb on + strandat 4136.860 kb on - strand, within CA264_17785at 4136.951 kb on - strand, within CA264_17785at 4136.951 kb on - strand, within CA264_17785at 4136.996 kb on + strand, within CA264_17785at 4136.997 kb on - strand, within CA264_17785at 4136.997 kb on - strand, within CA264_17785at 4137.079 kb on + strandat 4137.084 kb on + strandat 4137.121 kb on - strandat 4137.169 kb on - strandat 4137.729 kb on - strand, within CA264_17790at 4137.935 kb on - strand, within CA264_17790at 4137.960 kb on - strand, within CA264_17790at 4137.960 kb on - strand, within CA264_17790at 4138.023 kb on + strandat 4138.024 kb on - strandat 4138.024 kb on - strandat 4138.024 kb on - strandat 4138.024 kb on - strandat 4138.066 kb on - strandat 4138.077 kb on - strandat 4138.732 kb on + strandat 4138.732 kb on + strandat 4138.732 kb on + strandat 4138.732 kb on + strandat 4138.741 kb on - strandat 4138.760 kb on + strandat 4138.760 kb on + strandat 4138.762 kb on + strandat 4138.762 kb on + strandat 4138.763 kb on - strandat 4138.763 kb on - strandat 4138.886 kb on + strand, within CA264_17800at 4138.887 kb on - strand, within CA264_17800at 4138.915 kb on - strandat 4138.915 kb on - strandat 4139.025 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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4,136,204 + -1.1
4,136,210 - -1.2
4,136,215 - -1.2
4,136,215 - -0.6
4,136,215 - -1.6
4,136,255 + +1.0
4,136,429 - CA264_17780 0.39 -1.9
4,136,429 - CA264_17780 0.39 -2.4
4,136,462 + CA264_17780 0.45 +0.7
4,136,637 + CA264_17780 0.78 -1.1
4,136,644 - CA264_17780 0.79 -1.2
4,136,682 - CA264_17780 0.86 -2.1
4,136,773 + -1.1
4,136,786 + -0.9
4,136,860 - CA264_17785 0.26 -1.3
4,136,951 - CA264_17785 0.56 -2.1
4,136,951 - CA264_17785 0.56 +0.6
4,136,996 + CA264_17785 0.70 +0.0
4,136,997 - CA264_17785 0.71 -1.4
4,136,997 - CA264_17785 0.71 -1.4
4,137,079 + -0.3
4,137,084 + -0.7
4,137,121 - -0.4
4,137,169 - -0.1
4,137,729 - CA264_17790 0.64 -0.6
4,137,935 - CA264_17790 0.86 -1.1
4,137,960 - CA264_17790 0.89 -0.9
4,137,960 - CA264_17790 0.89 -0.7
4,138,023 + +1.1
4,138,024 - +0.9
4,138,024 - -0.7
4,138,024 - -0.8
4,138,024 - -0.0
4,138,066 - +0.6
4,138,077 - +0.0
4,138,732 + -0.6
4,138,732 + -0.9
4,138,732 + -0.1
4,138,732 + -0.5
4,138,741 - -1.1
4,138,760 + -0.2
4,138,760 + +0.7
4,138,762 + -0.3
4,138,762 + -1.1
4,138,763 - +0.0
4,138,763 - +0.9
4,138,886 + CA264_17800 0.51 -0.5
4,138,887 - CA264_17800 0.52 -0.0
4,138,915 - +3.2
4,138,915 - -0.2
4,139,025 - +0.3

Or see this region's nucleotide sequence