Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16945

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16940 and CA264_16945 are separated by 66 nucleotidesCA264_16945 and CA264_16950 are separated by 223 nucleotides CA264_16940: CA264_16940 - nicotinate-nucleotide diphosphorylase (carboxylating), at 3,943,710 to 3,944,567 _16940 CA264_16945: CA264_16945 - DUF4783 domain-containing protein, at 3,944,634 to 3,945,047 _16945 CA264_16950: CA264_16950 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 3,945,271 to 3,946,797 _16950 Position (kb) 3944 3945 3946Strain fitness (log2 ratio) -2 -1 0 1 2at 3943.681 kb on + strandat 3943.691 kb on + strandat 3943.692 kb on - strandat 3944.578 kb on + strandat 3944.596 kb on - strandat 3944.624 kb on + strandat 3944.625 kb on - strandat 3944.628 kb on - strandat 3944.707 kb on + strand, within CA264_16945at 3944.728 kb on + strand, within CA264_16945at 3945.048 kb on - strandat 3945.071 kb on + strandat 3945.119 kb on - strandat 3945.124 kb on + strandat 3945.125 kb on - strandat 3945.133 kb on + strandat 3945.133 kb on + strandat 3945.137 kb on + strandat 3945.168 kb on - strandat 3945.197 kb on + strandat 3945.212 kb on - strandat 3945.213 kb on + strandat 3945.213 kb on + strandat 3945.255 kb on + strandat 3945.256 kb on - strandat 3945.259 kb on + strandat 3945.259 kb on + strandat 3945.259 kb on + strandat 3945.260 kb on - strandat 3945.261 kb on + strandat 3945.262 kb on - strandat 3945.262 kb on - strandat 3945.262 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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3,943,681 + +2.0
3,943,691 + -0.7
3,943,692 - +0.0
3,944,578 + +0.0
3,944,596 - -0.7
3,944,624 + -0.8
3,944,625 - -0.3
3,944,628 - -0.9
3,944,707 + CA264_16945 0.18 -1.1
3,944,728 + CA264_16945 0.23 -1.7
3,945,048 - +0.1
3,945,071 + +0.2
3,945,119 - -1.6
3,945,124 + -0.3
3,945,125 - +0.6
3,945,133 + -1.2
3,945,133 + -2.2
3,945,137 + -0.9
3,945,168 - -1.1
3,945,197 + -0.3
3,945,212 - -0.7
3,945,213 + +0.8
3,945,213 + -0.1
3,945,255 + -0.2
3,945,256 - +0.2
3,945,259 + -0.5
3,945,259 + +0.0
3,945,259 + +0.0
3,945,260 - +1.7
3,945,261 + -0.8
3,945,262 - -0.8
3,945,262 - -0.4
3,945,262 - -0.9

Or see this region's nucleotide sequence