Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16165

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16155 and CA264_16160 are separated by 256 nucleotidesCA264_16160 and CA264_16165 are separated by 16 nucleotidesCA264_16165 and CA264_16170 are separated by 190 nucleotides CA264_16155: CA264_16155 - hypothetical protein, at 3,762,591 to 3,763,331 _16155 CA264_16160: CA264_16160 - hypothetical protein, at 3,763,588 to 3,763,914 _16160 CA264_16165: CA264_16165 - hypothetical protein, at 3,763,931 to 3,764,479 _16165 CA264_16170: CA264_16170 - hypothetical protein, at 3,764,670 to 3,765,293 _16170 Position (kb) 3763 3764 3765Strain fitness (log2 ratio) -2 -1 0 1at 3762.987 kb on - strand, within CA264_16155at 3763.065 kb on - strand, within CA264_16155at 3763.158 kb on - strand, within CA264_16155at 3763.207 kb on - strand, within CA264_16155at 3763.232 kb on + strand, within CA264_16155at 3763.315 kb on - strandat 3763.453 kb on + strandat 3763.548 kb on + strandat 3763.576 kb on - strandat 3763.579 kb on + strandat 3763.579 kb on + strandat 3763.932 kb on + strandat 3763.933 kb on - strandat 3763.959 kb on - strandat 3764.014 kb on + strand, within CA264_16165at 3764.106 kb on - strand, within CA264_16165at 3764.107 kb on + strand, within CA264_16165at 3764.107 kb on + strand, within CA264_16165at 3764.107 kb on + strand, within CA264_16165at 3764.108 kb on - strand, within CA264_16165at 3764.108 kb on - strand, within CA264_16165at 3764.154 kb on - strand, within CA264_16165at 3764.250 kb on + strand, within CA264_16165at 3764.250 kb on + strand, within CA264_16165at 3764.274 kb on - strand, within CA264_16165at 3764.483 kb on + strandat 3764.484 kb on - strandat 3764.484 kb on - strandat 3764.486 kb on - strandat 3764.487 kb on + strandat 3764.501 kb on + strandat 3764.512 kb on + strandat 3764.580 kb on - strandat 3764.580 kb on - strandat 3764.656 kb on + strandat 3764.656 kb on + strandat 3764.656 kb on + strandat 3764.695 kb on + strandat 3764.699 kb on - strandat 3764.707 kb on + strandat 3765.073 kb on + strand, within CA264_16170at 3765.073 kb on + strand, within CA264_16170at 3765.073 kb on + strand, within CA264_16170at 3765.073 kb on + strand, within CA264_16170at 3765.074 kb on - strand, within CA264_16170at 3765.076 kb on + strand, within CA264_16170at 3765.076 kb on + strand, within CA264_16170at 3765.077 kb on - strand, within CA264_16170at 3765.167 kb on - strand, within CA264_16170at 3765.176 kb on + strand, within CA264_16170at 3765.238 kb on + strandat 3765.239 kb on - strandat 3765.258 kb on + strandat 3765.276 kb on + strandat 3765.276 kb on + strandat 3765.300 kb on - strandat 3765.404 kb on + strandat 3765.405 kb on - strandat 3765.405 kb on - strandat 3765.405 kb on - strandat 3765.405 kb on - strandat 3765.430 kb on + strandat 3765.434 kb on + strandat 3765.440 kb on + strandat 3765.441 kb on - strandat 3765.444 kb on + strandat 3765.445 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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3,762,987 - CA264_16155 0.53 -0.2
3,763,065 - CA264_16155 0.64 -0.3
3,763,158 - CA264_16155 0.77 -1.7
3,763,207 - CA264_16155 0.83 -0.3
3,763,232 + CA264_16155 0.87 +0.2
3,763,315 - -0.3
3,763,453 + +0.3
3,763,548 + -0.8
3,763,576 - -0.2
3,763,579 + -1.2
3,763,579 + +0.9
3,763,932 + -0.1
3,763,933 - -0.3
3,763,959 - +0.2
3,764,014 + CA264_16165 0.15 -0.7
3,764,106 - CA264_16165 0.32 -1.9
3,764,107 + CA264_16165 0.32 +0.5
3,764,107 + CA264_16165 0.32 -0.3
3,764,107 + CA264_16165 0.32 -0.0
3,764,108 - CA264_16165 0.32 -0.4
3,764,108 - CA264_16165 0.32 -1.4
3,764,154 - CA264_16165 0.41 +0.1
3,764,250 + CA264_16165 0.58 -1.3
3,764,250 + CA264_16165 0.58 -0.7
3,764,274 - CA264_16165 0.62 -0.7
3,764,483 + +0.1
3,764,484 - +0.4
3,764,484 - -0.1
3,764,486 - +0.0
3,764,487 + +0.7
3,764,501 + +1.4
3,764,512 + +1.1
3,764,580 - +0.8
3,764,580 - -0.1
3,764,656 + +0.7
3,764,656 + +0.3
3,764,656 + -0.0
3,764,695 + +0.1
3,764,699 - -0.1
3,764,707 + -0.6
3,765,073 + CA264_16170 0.65 -0.1
3,765,073 + CA264_16170 0.65 +1.7
3,765,073 + CA264_16170 0.65 -0.1
3,765,073 + CA264_16170 0.65 -0.2
3,765,074 - CA264_16170 0.65 -0.3
3,765,076 + CA264_16170 0.65 -1.1
3,765,076 + CA264_16170 0.65 -0.0
3,765,077 - CA264_16170 0.65 -0.8
3,765,167 - CA264_16170 0.80 +0.5
3,765,176 + CA264_16170 0.81 -1.3
3,765,238 + -0.6
3,765,239 - +0.6
3,765,258 + +0.3
3,765,276 + +0.7
3,765,276 + +0.8
3,765,300 - +0.9
3,765,404 + +0.8
3,765,405 - +1.3
3,765,405 - -0.2
3,765,405 - -0.3
3,765,405 - -0.4
3,765,430 + -0.2
3,765,434 + -0.5
3,765,440 + -0.7
3,765,441 - -0.6
3,765,444 + -0.4
3,765,445 - -0.1

Or see this region's nucleotide sequence