Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15035

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15030 and CA264_15035 are separated by 153 nucleotidesCA264_15035 and CA264_15040 are separated by 59 nucleotidesCA264_15040 and CA264_15045 are separated by 37 nucleotides CA264_15030: CA264_15030 - hypothetical protein, at 3,527,568 to 3,529,022 _15030 CA264_15035: CA264_15035 - acyl-CoA dehydrogenase, at 3,529,176 to 3,530,966 _15035 CA264_15040: CA264_15040 - four helix bundle protein, at 3,531,026 to 3,531,385 _15040 CA264_15045: CA264_15045 - acetyl-CoA acetyltransferase, at 3,531,423 to 3,532,601 _15045 Position (kb) 3529 3530 3531Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3528.207 kb on + strand, within CA264_15030at 3528.207 kb on + strand, within CA264_15030at 3528.208 kb on - strand, within CA264_15030at 3528.211 kb on + strand, within CA264_15030at 3528.211 kb on + strand, within CA264_15030at 3528.211 kb on + strand, within CA264_15030at 3528.211 kb on + strand, within CA264_15030at 3528.211 kb on + strand, within CA264_15030at 3528.212 kb on - strand, within CA264_15030at 3528.257 kb on + strand, within CA264_15030at 3528.283 kb on + strand, within CA264_15030at 3528.284 kb on - strand, within CA264_15030at 3528.518 kb on + strand, within CA264_15030at 3528.542 kb on - strand, within CA264_15030at 3528.542 kb on - strand, within CA264_15030at 3528.553 kb on - strand, within CA264_15030at 3528.766 kb on - strand, within CA264_15030at 3528.795 kb on - strand, within CA264_15030at 3528.809 kb on - strand, within CA264_15030at 3528.819 kb on + strand, within CA264_15030at 3528.820 kb on - strand, within CA264_15030at 3528.828 kb on + strand, within CA264_15030at 3528.851 kb on + strand, within CA264_15030at 3528.864 kb on - strand, within CA264_15030at 3528.872 kb on + strand, within CA264_15030at 3528.903 kb on - strandat 3528.915 kb on + strandat 3529.001 kb on - strandat 3529.001 kb on - strandat 3529.016 kb on + strandat 3529.021 kb on - strandat 3529.030 kb on + strandat 3529.144 kb on - strandat 3529.156 kb on + strandat 3529.160 kb on + strandat 3529.162 kb on + strandat 3529.163 kb on - strandat 3529.186 kb on + strandat 3529.317 kb on + strandat 3529.318 kb on - strandat 3529.363 kb on - strand, within CA264_15035at 3529.369 kb on - strand, within CA264_15035at 3529.415 kb on + strand, within CA264_15035at 3529.420 kb on - strand, within CA264_15035at 3529.431 kb on + strand, within CA264_15035at 3529.459 kb on + strand, within CA264_15035at 3529.460 kb on - strand, within CA264_15035at 3529.523 kb on + strand, within CA264_15035at 3529.526 kb on - strand, within CA264_15035at 3529.526 kb on - strand, within CA264_15035at 3529.727 kb on + strand, within CA264_15035at 3529.727 kb on + strand, within CA264_15035at 3529.728 kb on - strand, within CA264_15035at 3529.728 kb on - strand, within CA264_15035at 3529.799 kb on - strand, within CA264_15035at 3529.852 kb on + strand, within CA264_15035at 3529.852 kb on + strand, within CA264_15035at 3529.853 kb on - strand, within CA264_15035at 3529.876 kb on - strand, within CA264_15035at 3529.975 kb on + strand, within CA264_15035at 3529.980 kb on - strand, within CA264_15035at 3529.996 kb on + strand, within CA264_15035at 3530.018 kb on - strand, within CA264_15035at 3530.048 kb on - strand, within CA264_15035at 3530.051 kb on + strand, within CA264_15035at 3530.081 kb on + strand, within CA264_15035at 3530.104 kb on + strand, within CA264_15035at 3530.105 kb on - strand, within CA264_15035at 3530.147 kb on + strand, within CA264_15035at 3530.148 kb on - strand, within CA264_15035at 3530.166 kb on - strand, within CA264_15035at 3530.343 kb on - strand, within CA264_15035at 3530.352 kb on - strand, within CA264_15035at 3530.367 kb on + strand, within CA264_15035at 3530.440 kb on + strand, within CA264_15035at 3530.440 kb on + strand, within CA264_15035at 3530.441 kb on - strand, within CA264_15035at 3530.441 kb on - strand, within CA264_15035at 3530.522 kb on - strand, within CA264_15035at 3530.560 kb on + strand, within CA264_15035at 3530.606 kb on + strand, within CA264_15035at 3530.607 kb on - strand, within CA264_15035at 3530.619 kb on - strand, within CA264_15035at 3530.687 kb on + strand, within CA264_15035at 3530.710 kb on + strand, within CA264_15035at 3530.840 kb on + strandat 3530.886 kb on + strandat 3530.887 kb on - strandat 3530.892 kb on + strandat 3530.893 kb on - strandat 3530.970 kb on + strandat 3530.970 kb on + strandat 3530.980 kb on + strandat 3530.988 kb on - strandat 3531.000 kb on + strandat 3531.001 kb on - strandat 3531.028 kb on - strandat 3531.028 kb on - strandat 3531.028 kb on - strandat 3531.037 kb on + strandat 3531.037 kb on + strandat 3531.095 kb on + strand, within CA264_15040at 3531.095 kb on + strand, within CA264_15040at 3531.105 kb on - strand, within CA264_15040at 3531.269 kb on + strand, within CA264_15040at 3531.281 kb on - strand, within CA264_15040at 3531.281 kb on - strand, within CA264_15040at 3531.324 kb on + strand, within CA264_15040at 3531.324 kb on + strand, within CA264_15040at 3531.324 kb on + strand, within CA264_15040at 3531.324 kb on + strand, within CA264_15040at 3531.324 kb on + strand, within CA264_15040at 3531.326 kb on + strand, within CA264_15040at 3531.327 kb on - strand, within CA264_15040at 3531.338 kb on + strand, within CA264_15040at 3531.405 kb on - strandat 3531.480 kb on + strandat 3531.481 kb on - strandat 3531.778 kb on - strand, within CA264_15045at 3531.882 kb on + strand, within CA264_15045at 3531.888 kb on - strand, within CA264_15045at 3531.888 kb on - strand, within CA264_15045

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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3,528,207 + CA264_15030 0.44 +0.4
3,528,207 + CA264_15030 0.44 +2.7
3,528,208 - CA264_15030 0.44 -0.3
3,528,211 + CA264_15030 0.44 +1.6
3,528,211 + CA264_15030 0.44 -0.3
3,528,211 + CA264_15030 0.44 +0.0
3,528,211 + CA264_15030 0.44 -1.1
3,528,211 + CA264_15030 0.44 +0.0
3,528,212 - CA264_15030 0.44 -0.2
3,528,257 + CA264_15030 0.47 -0.5
3,528,283 + CA264_15030 0.49 +0.1
3,528,284 - CA264_15030 0.49 -1.2
3,528,518 + CA264_15030 0.65 +0.5
3,528,542 - CA264_15030 0.67 +0.1
3,528,542 - CA264_15030 0.67 +0.7
3,528,553 - CA264_15030 0.68 -1.1
3,528,766 - CA264_15030 0.82 -0.0
3,528,795 - CA264_15030 0.84 +0.1
3,528,809 - CA264_15030 0.85 +0.3
3,528,819 + CA264_15030 0.86 -0.8
3,528,820 - CA264_15030 0.86 +0.6
3,528,828 + CA264_15030 0.87 +0.8
3,528,851 + CA264_15030 0.88 -0.6
3,528,864 - CA264_15030 0.89 -1.3
3,528,872 + CA264_15030 0.90 -1.3
3,528,903 - -1.4
3,528,915 + +0.9
3,529,001 - +0.1
3,529,001 - +0.3
3,529,016 + -0.4
3,529,021 - -0.4
3,529,030 + -0.1
3,529,144 - -0.1
3,529,156 + +0.6
3,529,160 + +0.3
3,529,162 + -0.3
3,529,163 - -0.2
3,529,186 + -1.4
3,529,317 + -0.4
3,529,318 - -0.9
3,529,363 - CA264_15035 0.10 -1.5
3,529,369 - CA264_15035 0.11 -1.5
3,529,415 + CA264_15035 0.13 +0.1
3,529,420 - CA264_15035 0.14 -0.5
3,529,431 + CA264_15035 0.14 -1.6
3,529,459 + CA264_15035 0.16 -0.3
3,529,460 - CA264_15035 0.16 -1.9
3,529,523 + CA264_15035 0.19 -1.1
3,529,526 - CA264_15035 0.20 -1.8
3,529,526 - CA264_15035 0.20 +0.3
3,529,727 + CA264_15035 0.31 -0.6
3,529,727 + CA264_15035 0.31 -0.4
3,529,728 - CA264_15035 0.31 -0.2
3,529,728 - CA264_15035 0.31 -2.0
3,529,799 - CA264_15035 0.35 -1.4
3,529,852 + CA264_15035 0.38 -0.1
3,529,852 + CA264_15035 0.38 +0.4
3,529,853 - CA264_15035 0.38 -0.5
3,529,876 - CA264_15035 0.39 -0.5
3,529,975 + CA264_15035 0.45 -1.4
3,529,980 - CA264_15035 0.45 -2.4
3,529,996 + CA264_15035 0.46 -0.7
3,530,018 - CA264_15035 0.47 -1.4
3,530,048 - CA264_15035 0.49 -1.1
3,530,051 + CA264_15035 0.49 +0.6
3,530,081 + CA264_15035 0.51 -0.6
3,530,104 + CA264_15035 0.52 -0.5
3,530,105 - CA264_15035 0.52 -0.4
3,530,147 + CA264_15035 0.54 -1.3
3,530,148 - CA264_15035 0.54 -0.8
3,530,166 - CA264_15035 0.55 -0.7
3,530,343 - CA264_15035 0.65 -1.1
3,530,352 - CA264_15035 0.66 -1.3
3,530,367 + CA264_15035 0.66 -2.0
3,530,440 + CA264_15035 0.71 -2.4
3,530,440 + CA264_15035 0.71 +0.1
3,530,441 - CA264_15035 0.71 -0.1
3,530,441 - CA264_15035 0.71 -0.0
3,530,522 - CA264_15035 0.75 -0.1
3,530,560 + CA264_15035 0.77 +0.5
3,530,606 + CA264_15035 0.80 +0.9
3,530,607 - CA264_15035 0.80 -0.9
3,530,619 - CA264_15035 0.81 -0.6
3,530,687 + CA264_15035 0.84 -0.7
3,530,710 + CA264_15035 0.86 -1.2
3,530,840 + -0.7
3,530,886 + -0.3
3,530,887 - -1.0
3,530,892 + -1.5
3,530,893 - -1.3
3,530,970 + -0.4
3,530,970 + -0.5
3,530,980 + +0.1
3,530,988 - -2.9
3,531,000 + -1.4
3,531,001 - -0.1
3,531,028 - -1.3
3,531,028 - -0.7
3,531,028 - -0.9
3,531,037 + +0.2
3,531,037 + -1.2
3,531,095 + CA264_15040 0.19 -0.4
3,531,095 + CA264_15040 0.19 +0.0
3,531,105 - CA264_15040 0.22 -1.2
3,531,269 + CA264_15040 0.68 -0.8
3,531,281 - CA264_15040 0.71 -0.7
3,531,281 - CA264_15040 0.71 +0.3
3,531,324 + CA264_15040 0.83 -0.2
3,531,324 + CA264_15040 0.83 +0.8
3,531,324 + CA264_15040 0.83 -1.3
3,531,324 + CA264_15040 0.83 +0.6
3,531,324 + CA264_15040 0.83 -0.9
3,531,326 + CA264_15040 0.83 -0.2
3,531,327 - CA264_15040 0.84 +0.1
3,531,338 + CA264_15040 0.87 -0.3
3,531,405 - -0.9
3,531,480 + -2.2
3,531,481 - -0.8
3,531,778 - CA264_15045 0.30 -1.6
3,531,882 + CA264_15045 0.39 -0.7
3,531,888 - CA264_15045 0.39 -2.7
3,531,888 - CA264_15045 0.39 -1.4

Or see this region's nucleotide sequence