Experiment: m.b. Chloride 750 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13975 and CA264_13980 are separated by 51 nucleotides CA264_13980 and CA264_13985 are separated by 19 nucleotides CA264_13985 and CA264_13990 are separated by 97 nucleotides
CA264_13975: CA264_13975 - LacI family transcriptional regulator, at 3,270,651 to 3,271,694
_13975
CA264_13980: CA264_13980 - alpha-glucuronidase, at 3,271,746 to 3,273,911
_13980
CA264_13985: CA264_13985 - 3-oxoacyl-ACP reductase, at 3,273,931 to 3,274,689
_13985
CA264_13990: CA264_13990 - 1,4-beta-xylanase, at 3,274,787 to 3,275,965
_13990
Position (kb)
3271
3272
3273
3274 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3270.856 kb on + strand, within CA264_13975 at 3270.872 kb on + strand, within CA264_13975 at 3270.927 kb on + strand, within CA264_13975 at 3270.940 kb on + strand, within CA264_13975 at 3271.048 kb on + strand, within CA264_13975 at 3271.147 kb on + strand, within CA264_13975 at 3271.147 kb on + strand, within CA264_13975 at 3271.148 kb on - strand, within CA264_13975 at 3271.236 kb on + strand, within CA264_13975 at 3271.533 kb on + strand, within CA264_13975 at 3271.582 kb on - strand, within CA264_13975 at 3271.738 kb on + strand at 3271.827 kb on + strand at 3271.827 kb on + strand at 3271.829 kb on + strand at 3271.830 kb on - strand at 3271.830 kb on - strand at 3271.830 kb on - strand at 3271.830 kb on - strand at 3271.964 kb on + strand, within CA264_13980 at 3271.996 kb on + strand, within CA264_13980 at 3271.997 kb on - strand, within CA264_13980 at 3272.142 kb on + strand, within CA264_13980 at 3272.143 kb on - strand, within CA264_13980 at 3272.305 kb on + strand, within CA264_13980 at 3272.306 kb on - strand, within CA264_13980 at 3272.359 kb on - strand, within CA264_13980 at 3272.362 kb on + strand, within CA264_13980 at 3272.362 kb on + strand, within CA264_13980 at 3272.363 kb on - strand, within CA264_13980 at 3272.363 kb on - strand, within CA264_13980 at 3272.382 kb on + strand, within CA264_13980 at 3272.522 kb on - strand, within CA264_13980 at 3272.527 kb on + strand, within CA264_13980 at 3272.527 kb on + strand, within CA264_13980 at 3272.703 kb on + strand, within CA264_13980 at 3273.016 kb on - strand, within CA264_13980 at 3273.016 kb on - strand, within CA264_13980 at 3273.031 kb on - strand, within CA264_13980 at 3273.057 kb on + strand, within CA264_13980 at 3273.057 kb on + strand, within CA264_13980 at 3273.058 kb on - strand, within CA264_13980 at 3273.128 kb on + strand, within CA264_13980 at 3273.130 kb on + strand, within CA264_13980 at 3273.130 kb on + strand, within CA264_13980 at 3273.130 kb on + strand, within CA264_13980 at 3273.131 kb on - strand, within CA264_13980 at 3273.345 kb on + strand, within CA264_13980 at 3273.346 kb on - strand, within CA264_13980 at 3273.447 kb on + strand, within CA264_13980 at 3273.519 kb on + strand, within CA264_13980 at 3273.614 kb on - strand, within CA264_13980 at 3273.804 kb on + strand at 3273.822 kb on - strand at 3273.860 kb on + strand at 3273.908 kb on - strand at 3273.909 kb on + strand at 3273.915 kb on + strand at 3273.916 kb on - strand at 3273.916 kb on - strand at 3273.916 kb on - strand at 3273.916 kb on - strand at 3273.926 kb on + strand at 3273.926 kb on + strand at 3273.926 kb on + strand at 3273.927 kb on - strand at 3273.940 kb on - strand at 3273.946 kb on - strand at 3274.105 kb on + strand, within CA264_13985 at 3274.209 kb on + strand, within CA264_13985 at 3274.210 kb on - strand, within CA264_13985 at 3274.228 kb on - strand, within CA264_13985 at 3274.263 kb on - strand, within CA264_13985 at 3274.266 kb on + strand, within CA264_13985 at 3274.267 kb on - strand, within CA264_13985 at 3274.267 kb on - strand, within CA264_13985 at 3274.370 kb on - strand, within CA264_13985 at 3274.577 kb on + strand, within CA264_13985 at 3274.609 kb on + strand, within CA264_13985 at 3274.610 kb on - strand, within CA264_13985 at 3274.610 kb on - strand, within CA264_13985 at 3274.612 kb on + strand, within CA264_13985 at 3274.613 kb on - strand, within CA264_13985
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM remove 3,270,856 + CA264_13975 0.20 -0.2 3,270,872 + CA264_13975 0.21 -0.7 3,270,927 + CA264_13975 0.26 -1.1 3,270,940 + CA264_13975 0.28 -1.7 3,271,048 + CA264_13975 0.38 -1.2 3,271,147 + CA264_13975 0.48 -0.5 3,271,147 + CA264_13975 0.48 -2.6 3,271,148 - CA264_13975 0.48 -1.0 3,271,236 + CA264_13975 0.56 -0.2 3,271,533 + CA264_13975 0.84 +0.2 3,271,582 - CA264_13975 0.89 -1.7 3,271,738 + -1.8 3,271,827 + -0.6 3,271,827 + +2.8 3,271,829 + -2.3 3,271,830 - +1.4 3,271,830 - -0.2 3,271,830 - -1.5 3,271,830 - -0.3 3,271,964 + CA264_13980 0.10 -1.1 3,271,996 + CA264_13980 0.12 -1.2 3,271,997 - CA264_13980 0.12 -1.7 3,272,142 + CA264_13980 0.18 -0.2 3,272,143 - CA264_13980 0.18 -1.0 3,272,305 + CA264_13980 0.26 -2.9 3,272,306 - CA264_13980 0.26 -0.8 3,272,359 - CA264_13980 0.28 -0.8 3,272,362 + CA264_13980 0.28 -1.5 3,272,362 + CA264_13980 0.28 -1.6 3,272,363 - CA264_13980 0.28 -0.0 3,272,363 - CA264_13980 0.28 -1.0 3,272,382 + CA264_13980 0.29 -0.2 3,272,522 - CA264_13980 0.36 -2.5 3,272,527 + CA264_13980 0.36 -0.5 3,272,527 + CA264_13980 0.36 -0.9 3,272,703 + CA264_13980 0.44 -0.8 3,273,016 - CA264_13980 0.59 +0.0 3,273,016 - CA264_13980 0.59 -1.4 3,273,031 - CA264_13980 0.59 -2.7 3,273,057 + CA264_13980 0.61 -1.8 3,273,057 + CA264_13980 0.61 -0.4 3,273,058 - CA264_13980 0.61 -1.3 3,273,128 + CA264_13980 0.64 -0.5 3,273,130 + CA264_13980 0.64 -0.1 3,273,130 + CA264_13980 0.64 -1.2 3,273,130 + CA264_13980 0.64 -2.3 3,273,131 - CA264_13980 0.64 +1.7 3,273,345 + CA264_13980 0.74 -1.8 3,273,346 - CA264_13980 0.74 -0.8 3,273,447 + CA264_13980 0.79 +0.2 3,273,519 + CA264_13980 0.82 -0.1 3,273,614 - CA264_13980 0.86 -1.2 3,273,804 + -1.9 3,273,822 - -2.3 3,273,860 + -2.0 3,273,908 - -1.4 3,273,909 + -1.4 3,273,915 + +0.1 3,273,916 - -1.8 3,273,916 - -0.9 3,273,916 - -0.2 3,273,916 - -0.8 3,273,926 + -0.7 3,273,926 + -1.8 3,273,926 + -2.0 3,273,927 - -0.4 3,273,940 - +0.3 3,273,946 - -1.7 3,274,105 + CA264_13985 0.23 -1.0 3,274,209 + CA264_13985 0.37 +0.2 3,274,210 - CA264_13985 0.37 -0.7 3,274,228 - CA264_13985 0.39 -1.3 3,274,263 - CA264_13985 0.44 -0.7 3,274,266 + CA264_13985 0.44 -1.5 3,274,267 - CA264_13985 0.44 -0.6 3,274,267 - CA264_13985 0.44 -0.7 3,274,370 - CA264_13985 0.58 -0.8 3,274,577 + CA264_13985 0.85 -2.5 3,274,609 + CA264_13985 0.89 -1.2 3,274,610 - CA264_13985 0.89 -0.8 3,274,610 - CA264_13985 0.89 -0.6 3,274,612 + CA264_13985 0.90 -0.2 3,274,613 - CA264_13985 0.90 -1.4
Or see this region's nucleotide sequence