Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13930

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13925 and CA264_13930 are separated by 278 nucleotidesCA264_13930 and CA264_13935 are separated by 34 nucleotides CA264_13925: CA264_13925 - cytochrome c oxidase subunit I, at 3,250,397 to 3,252,217 _13925 CA264_13930: CA264_13930 - alpha-N-arabinofuranosidase, at 3,252,496 to 3,253,599 _13930 CA264_13935: CA264_13935 - glycoside hydrolase 43 family protein, at 3,253,634 to 3,255,361 _13935 Position (kb) 3252 3253 3254Strain fitness (log2 ratio) -2 -1 0 1 2at 3251.599 kb on + strand, within CA264_13925at 3251.599 kb on + strand, within CA264_13925at 3251.600 kb on - strand, within CA264_13925at 3251.600 kb on - strand, within CA264_13925at 3251.602 kb on - strand, within CA264_13925at 3251.602 kb on - strand, within CA264_13925at 3251.602 kb on - strand, within CA264_13925at 3251.602 kb on - strand, within CA264_13925at 3251.771 kb on + strand, within CA264_13925at 3251.771 kb on + strand, within CA264_13925at 3252.094 kb on - strandat 3252.094 kb on - strandat 3252.186 kb on - strandat 3252.209 kb on - strandat 3252.234 kb on - strandat 3252.254 kb on + strandat 3252.287 kb on + strandat 3252.302 kb on - strandat 3252.363 kb on - strandat 3252.497 kb on + strandat 3252.526 kb on + strandat 3252.526 kb on + strandat 3252.527 kb on - strandat 3252.527 kb on - strandat 3252.553 kb on - strandat 3252.554 kb on + strandat 3252.569 kb on - strandat 3252.594 kb on + strandat 3252.636 kb on + strand, within CA264_13930at 3252.636 kb on + strand, within CA264_13930at 3252.636 kb on + strand, within CA264_13930at 3252.636 kb on + strand, within CA264_13930at 3252.637 kb on - strand, within CA264_13930at 3252.637 kb on - strand, within CA264_13930at 3252.695 kb on - strand, within CA264_13930at 3252.770 kb on + strand, within CA264_13930at 3252.779 kb on + strand, within CA264_13930at 3252.779 kb on + strand, within CA264_13930at 3252.783 kb on - strand, within CA264_13930at 3252.794 kb on + strand, within CA264_13930at 3252.794 kb on + strand, within CA264_13930at 3252.794 kb on + strand, within CA264_13930at 3252.795 kb on - strand, within CA264_13930at 3252.798 kb on + strand, within CA264_13930at 3252.798 kb on + strand, within CA264_13930at 3252.798 kb on + strand, within CA264_13930at 3252.798 kb on + strand, within CA264_13930at 3252.855 kb on + strand, within CA264_13930at 3252.864 kb on + strand, within CA264_13930at 3252.864 kb on + strand, within CA264_13930at 3252.869 kb on - strand, within CA264_13930at 3252.933 kb on + strand, within CA264_13930at 3252.965 kb on + strand, within CA264_13930at 3252.983 kb on + strand, within CA264_13930at 3253.024 kb on - strand, within CA264_13930at 3253.024 kb on - strand, within CA264_13930at 3253.034 kb on + strand, within CA264_13930at 3253.034 kb on + strand, within CA264_13930at 3253.040 kb on + strand, within CA264_13930at 3253.040 kb on + strand, within CA264_13930at 3253.041 kb on - strand, within CA264_13930at 3253.041 kb on - strand, within CA264_13930at 3253.044 kb on - strand, within CA264_13930at 3253.078 kb on + strand, within CA264_13930at 3253.078 kb on + strand, within CA264_13930at 3253.079 kb on - strand, within CA264_13930at 3253.083 kb on + strand, within CA264_13930at 3253.083 kb on + strand, within CA264_13930at 3253.083 kb on + strand, within CA264_13930at 3253.084 kb on - strand, within CA264_13930at 3253.084 kb on - strand, within CA264_13930at 3253.085 kb on + strand, within CA264_13930at 3253.085 kb on + strand, within CA264_13930at 3253.086 kb on - strand, within CA264_13930at 3253.174 kb on - strand, within CA264_13930at 3253.199 kb on + strand, within CA264_13930at 3253.200 kb on - strand, within CA264_13930at 3253.203 kb on + strand, within CA264_13930at 3253.203 kb on + strand, within CA264_13930at 3253.204 kb on - strand, within CA264_13930at 3253.292 kb on - strand, within CA264_13930at 3253.292 kb on - strand, within CA264_13930at 3253.381 kb on + strand, within CA264_13930at 3253.381 kb on + strand, within CA264_13930at 3253.397 kb on + strand, within CA264_13930at 3253.404 kb on - strand, within CA264_13930at 3253.446 kb on - strand, within CA264_13930at 3253.471 kb on - strand, within CA264_13930at 3253.471 kb on - strand, within CA264_13930at 3253.541 kb on - strandat 3253.602 kb on + strandat 3253.603 kb on - strandat 3253.608 kb on + strandat 3253.608 kb on + strandat 3253.608 kb on + strandat 3253.609 kb on - strandat 3253.611 kb on - strandat 3253.618 kb on - strandat 3253.618 kb on - strandat 3253.620 kb on + strandat 3253.621 kb on - strandat 3253.651 kb on + strandat 3253.651 kb on + strandat 3253.651 kb on + strandat 3253.652 kb on - strandat 3253.657 kb on + strandat 3253.658 kb on - strandat 3253.692 kb on + strandat 3253.712 kb on - strandat 3253.749 kb on + strandat 3253.749 kb on + strandat 3253.749 kb on + strandat 3253.750 kb on - strandat 3253.750 kb on - strandat 3253.817 kb on - strand, within CA264_13935at 3253.817 kb on - strand, within CA264_13935at 3253.824 kb on - strand, within CA264_13935at 3253.824 kb on - strand, within CA264_13935at 3253.892 kb on + strand, within CA264_13935at 3254.010 kb on + strand, within CA264_13935at 3254.013 kb on + strand, within CA264_13935at 3254.013 kb on + strand, within CA264_13935at 3254.014 kb on - strand, within CA264_13935at 3254.014 kb on - strand, within CA264_13935at 3254.039 kb on + strand, within CA264_13935at 3254.039 kb on + strand, within CA264_13935at 3254.039 kb on + strand, within CA264_13935at 3254.039 kb on + strand, within CA264_13935at 3254.042 kb on - strand, within CA264_13935at 3254.042 kb on - strand, within CA264_13935at 3254.071 kb on + strand, within CA264_13935at 3254.102 kb on + strand, within CA264_13935at 3254.137 kb on + strand, within CA264_13935at 3254.170 kb on + strand, within CA264_13935at 3254.254 kb on + strand, within CA264_13935at 3254.254 kb on + strand, within CA264_13935at 3254.254 kb on + strand, within CA264_13935at 3254.255 kb on - strand, within CA264_13935at 3254.340 kb on + strand, within CA264_13935at 3254.346 kb on + strand, within CA264_13935at 3254.347 kb on - strand, within CA264_13935at 3254.399 kb on - strand, within CA264_13935at 3254.434 kb on - strand, within CA264_13935at 3254.451 kb on + strand, within CA264_13935at 3254.593 kb on + strand, within CA264_13935at 3254.594 kb on - strand, within CA264_13935

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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3,251,599 + CA264_13925 0.66 +0.8
3,251,599 + CA264_13925 0.66 +1.8
3,251,600 - CA264_13925 0.66 -0.4
3,251,600 - CA264_13925 0.66 -0.4
3,251,602 - CA264_13925 0.66 -0.7
3,251,602 - CA264_13925 0.66 -0.1
3,251,602 - CA264_13925 0.66 +0.5
3,251,602 - CA264_13925 0.66 -0.2
3,251,771 + CA264_13925 0.75 -2.5
3,251,771 + CA264_13925 0.75 -0.9
3,252,094 - +0.2
3,252,094 - -0.6
3,252,186 - +0.4
3,252,209 - -0.1
3,252,234 - +0.7
3,252,254 + +1.5
3,252,287 + -0.4
3,252,302 - -1.9
3,252,363 - +0.0
3,252,497 + -0.2
3,252,526 + +0.8
3,252,526 + +0.1
3,252,527 - +0.6
3,252,527 - -0.3
3,252,553 - -0.2
3,252,554 + -0.3
3,252,569 - +0.3
3,252,594 + +0.6
3,252,636 + CA264_13930 0.13 -0.4
3,252,636 + CA264_13930 0.13 -0.0
3,252,636 + CA264_13930 0.13 -1.7
3,252,636 + CA264_13930 0.13 +0.7
3,252,637 - CA264_13930 0.13 -0.1
3,252,637 - CA264_13930 0.13 -0.5
3,252,695 - CA264_13930 0.18 -0.1
3,252,770 + CA264_13930 0.25 +0.2
3,252,779 + CA264_13930 0.26 -1.0
3,252,779 + CA264_13930 0.26 +0.2
3,252,783 - CA264_13930 0.26 -1.4
3,252,794 + CA264_13930 0.27 -0.3
3,252,794 + CA264_13930 0.27 -1.0
3,252,794 + CA264_13930 0.27 -0.6
3,252,795 - CA264_13930 0.27 +0.2
3,252,798 + CA264_13930 0.27 +0.2
3,252,798 + CA264_13930 0.27 -0.2
3,252,798 + CA264_13930 0.27 -0.4
3,252,798 + CA264_13930 0.27 +0.6
3,252,855 + CA264_13930 0.33 +0.5
3,252,864 + CA264_13930 0.33 +2.4
3,252,864 + CA264_13930 0.33 +0.8
3,252,869 - CA264_13930 0.34 +0.7
3,252,933 + CA264_13930 0.40 -0.8
3,252,965 + CA264_13930 0.42 +0.1
3,252,983 + CA264_13930 0.44 -0.7
3,253,024 - CA264_13930 0.48 -0.3
3,253,024 - CA264_13930 0.48 -0.2
3,253,034 + CA264_13930 0.49 -0.0
3,253,034 + CA264_13930 0.49 -1.7
3,253,040 + CA264_13930 0.49 -0.3
3,253,040 + CA264_13930 0.49 +0.1
3,253,041 - CA264_13930 0.49 +0.4
3,253,041 - CA264_13930 0.49 -0.4
3,253,044 - CA264_13930 0.50 -0.0
3,253,078 + CA264_13930 0.53 +0.8
3,253,078 + CA264_13930 0.53 -0.6
3,253,079 - CA264_13930 0.53 +0.0
3,253,083 + CA264_13930 0.53 -0.8
3,253,083 + CA264_13930 0.53 -0.7
3,253,083 + CA264_13930 0.53 -1.7
3,253,084 - CA264_13930 0.53 +0.4
3,253,084 - CA264_13930 0.53 +0.7
3,253,085 + CA264_13930 0.53 -1.3
3,253,085 + CA264_13930 0.53 +0.5
3,253,086 - CA264_13930 0.53 +0.0
3,253,174 - CA264_13930 0.61 +0.1
3,253,199 + CA264_13930 0.64 -0.3
3,253,200 - CA264_13930 0.64 -0.6
3,253,203 + CA264_13930 0.64 -1.3
3,253,203 + CA264_13930 0.64 -0.8
3,253,204 - CA264_13930 0.64 -0.3
3,253,292 - CA264_13930 0.72 -0.3
3,253,292 - CA264_13930 0.72 -0.3
3,253,381 + CA264_13930 0.80 +2.0
3,253,381 + CA264_13930 0.80 -1.1
3,253,397 + CA264_13930 0.82 +0.1
3,253,404 - CA264_13930 0.82 -0.8
3,253,446 - CA264_13930 0.86 -0.6
3,253,471 - CA264_13930 0.88 +1.4
3,253,471 - CA264_13930 0.88 -0.4
3,253,541 - +0.6
3,253,602 + +0.8
3,253,603 - -0.6
3,253,608 + -0.3
3,253,608 + +0.4
3,253,608 + -0.8
3,253,609 - +0.6
3,253,611 - -0.7
3,253,618 - -0.6
3,253,618 - -2.5
3,253,620 + +0.2
3,253,621 - +0.1
3,253,651 + +0.2
3,253,651 + +0.1
3,253,651 + -0.3
3,253,652 - -1.3
3,253,657 + -1.0
3,253,658 - -0.4
3,253,692 + -1.0
3,253,712 - -0.2
3,253,749 + -0.4
3,253,749 + -0.8
3,253,749 + +1.6
3,253,750 - -0.2
3,253,750 - -0.1
3,253,817 - CA264_13935 0.11 +1.4
3,253,817 - CA264_13935 0.11 -2.0
3,253,824 - CA264_13935 0.11 -1.0
3,253,824 - CA264_13935 0.11 -0.7
3,253,892 + CA264_13935 0.15 -1.6
3,254,010 + CA264_13935 0.22 -0.3
3,254,013 + CA264_13935 0.22 -1.0
3,254,013 + CA264_13935 0.22 +2.6
3,254,014 - CA264_13935 0.22 -1.5
3,254,014 - CA264_13935 0.22 -1.2
3,254,039 + CA264_13935 0.23 -0.6
3,254,039 + CA264_13935 0.23 -1.3
3,254,039 + CA264_13935 0.23 -1.7
3,254,039 + CA264_13935 0.23 +0.5
3,254,042 - CA264_13935 0.24 -0.9
3,254,042 - CA264_13935 0.24 -0.4
3,254,071 + CA264_13935 0.25 -0.2
3,254,102 + CA264_13935 0.27 -0.9
3,254,137 + CA264_13935 0.29 -0.5
3,254,170 + CA264_13935 0.31 +0.2
3,254,254 + CA264_13935 0.36 -1.2
3,254,254 + CA264_13935 0.36 -0.1
3,254,254 + CA264_13935 0.36 +0.7
3,254,255 - CA264_13935 0.36 +0.2
3,254,340 + CA264_13935 0.41 -0.4
3,254,346 + CA264_13935 0.41 +0.3
3,254,347 - CA264_13935 0.41 +0.2
3,254,399 - CA264_13935 0.44 -0.8
3,254,434 - CA264_13935 0.46 +0.0
3,254,451 + CA264_13935 0.47 -0.8
3,254,593 + CA264_13935 0.55 +0.2
3,254,594 - CA264_13935 0.56 -1.1

Or see this region's nucleotide sequence