Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12815

Experiment: m.b. Chloride 750 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_12810 and CA264_12815 are separated by 473 nucleotidesCA264_12815 and CA264_12820 are separated by 154 nucleotides CA264_12810: CA264_12810 - hypothetical protein, at 2,985,822 to 2,986,955 _12810 CA264_12815: CA264_12815 - polysaccharide deacetylase, at 2,987,429 to 2,988,436 _12815 CA264_12820: CA264_12820 - hypothetical protein, at 2,988,591 to 2,989,745 _12820 Position (kb) 2987 2988 2989Strain fitness (log2 ratio) -3 -2 -1 0 1at 2986.471 kb on + strand, within CA264_12810at 2986.472 kb on - strand, within CA264_12810at 2986.498 kb on + strand, within CA264_12810at 2986.503 kb on + strand, within CA264_12810at 2986.505 kb on + strand, within CA264_12810at 2986.505 kb on + strand, within CA264_12810at 2986.517 kb on + strand, within CA264_12810at 2986.530 kb on + strand, within CA264_12810at 2986.555 kb on + strand, within CA264_12810at 2986.555 kb on + strand, within CA264_12810at 2986.556 kb on - strand, within CA264_12810at 2986.592 kb on + strand, within CA264_12810at 2986.661 kb on - strand, within CA264_12810at 2986.700 kb on + strand, within CA264_12810at 2986.700 kb on + strand, within CA264_12810at 2986.806 kb on - strand, within CA264_12810at 2986.869 kb on + strandat 2986.910 kb on + strandat 2986.910 kb on + strandat 2986.973 kb on + strandat 2986.973 kb on + strandat 2986.974 kb on - strandat 2986.974 kb on - strandat 2986.974 kb on - strandat 2986.976 kb on + strandat 2987.014 kb on + strandat 2987.015 kb on - strandat 2987.022 kb on - strandat 2987.022 kb on - strandat 2987.022 kb on - strandat 2987.024 kb on + strandat 2987.024 kb on + strandat 2987.043 kb on + strandat 2987.043 kb on + strandat 2987.044 kb on - strandat 2987.048 kb on - strandat 2987.051 kb on + strandat 2987.103 kb on + strandat 2987.104 kb on - strandat 2987.109 kb on + strandat 2987.186 kb on - strandat 2987.282 kb on - strandat 2987.309 kb on - strandat 2987.350 kb on - strandat 2987.351 kb on + strandat 2987.351 kb on + strandat 2987.352 kb on - strandat 2987.352 kb on - strandat 2987.377 kb on - strandat 2987.411 kb on + strandat 2987.412 kb on - strandat 2987.415 kb on + strandat 2987.440 kb on + strandat 2987.442 kb on + strandat 2987.464 kb on - strandat 2987.527 kb on + strandat 2987.533 kb on + strand, within CA264_12815at 2987.619 kb on + strand, within CA264_12815at 2987.620 kb on - strand, within CA264_12815at 2987.745 kb on - strand, within CA264_12815at 2987.767 kb on + strand, within CA264_12815at 2987.810 kb on + strand, within CA264_12815at 2987.810 kb on + strand, within CA264_12815at 2987.810 kb on + strand, within CA264_12815at 2987.811 kb on - strand, within CA264_12815at 2987.962 kb on + strand, within CA264_12815at 2987.965 kb on + strand, within CA264_12815at 2988.044 kb on + strand, within CA264_12815at 2988.045 kb on - strand, within CA264_12815at 2988.054 kb on + strand, within CA264_12815at 2988.055 kb on - strand, within CA264_12815at 2988.129 kb on - strand, within CA264_12815at 2988.145 kb on - strand, within CA264_12815at 2988.197 kb on + strand, within CA264_12815at 2988.198 kb on - strand, within CA264_12815at 2988.227 kb on + strand, within CA264_12815at 2988.227 kb on + strand, within CA264_12815at 2988.313 kb on - strand, within CA264_12815at 2988.322 kb on - strand, within CA264_12815at 2988.372 kb on + strandat 2988.372 kb on + strandat 2988.408 kb on + strandat 2988.459 kb on - strandat 2988.476 kb on - strandat 2988.479 kb on - strandat 2988.547 kb on + strandat 2988.548 kb on - strandat 2988.623 kb on + strandat 2988.623 kb on + strandat 2988.623 kb on + strandat 2988.623 kb on + strandat 2988.623 kb on + strandat 2988.623 kb on + strandat 2988.623 kb on + strandat 2988.624 kb on - strandat 2988.624 kb on - strandat 2988.624 kb on - strandat 2988.624 kb on - strandat 2988.624 kb on - strandat 2988.626 kb on - strandat 2988.651 kb on + strandat 2988.712 kb on - strand, within CA264_12820at 2988.731 kb on + strand, within CA264_12820at 2988.732 kb on - strand, within CA264_12820at 2988.732 kb on - strand, within CA264_12820at 2988.734 kb on - strand, within CA264_12820at 2988.754 kb on + strand, within CA264_12820at 2988.754 kb on + strand, within CA264_12820at 2988.825 kb on - strand, within CA264_12820at 2988.842 kb on - strand, within CA264_12820at 2988.849 kb on + strand, within CA264_12820at 2988.850 kb on - strand, within CA264_12820at 2988.850 kb on - strand, within CA264_12820at 2989.068 kb on - strand, within CA264_12820at 2989.095 kb on + strand, within CA264_12820at 2989.123 kb on + strand, within CA264_12820at 2989.124 kb on - strand, within CA264_12820at 2989.127 kb on + strand, within CA264_12820at 2989.127 kb on + strand, within CA264_12820at 2989.132 kb on + strand, within CA264_12820at 2989.132 kb on + strand, within CA264_12820at 2989.132 kb on + strand, within CA264_12820at 2989.133 kb on - strand, within CA264_12820at 2989.133 kb on - strand, within CA264_12820at 2989.185 kb on - strand, within CA264_12820at 2989.195 kb on + strand, within CA264_12820at 2989.195 kb on + strand, within CA264_12820at 2989.195 kb on + strand, within CA264_12820at 2989.196 kb on - strand, within CA264_12820at 2989.235 kb on - strand, within CA264_12820at 2989.290 kb on - strand, within CA264_12820at 2989.304 kb on + strand, within CA264_12820at 2989.322 kb on + strand, within CA264_12820at 2989.375 kb on + strand, within CA264_12820at 2989.410 kb on + strand, within CA264_12820at 2989.410 kb on + strand, within CA264_12820at 2989.411 kb on - strand, within CA264_12820

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
remove
2,986,471 + CA264_12810 0.57 -0.7
2,986,472 - CA264_12810 0.57 +0.2
2,986,498 + CA264_12810 0.60 -1.2
2,986,503 + CA264_12810 0.60 +0.6
2,986,505 + CA264_12810 0.60 +0.6
2,986,505 + CA264_12810 0.60 -0.2
2,986,517 + CA264_12810 0.61 -0.4
2,986,530 + CA264_12810 0.62 -1.8
2,986,555 + CA264_12810 0.65 +0.2
2,986,555 + CA264_12810 0.65 +0.5
2,986,556 - CA264_12810 0.65 +0.3
2,986,592 + CA264_12810 0.68 -1.3
2,986,661 - CA264_12810 0.74 +1.7
2,986,700 + CA264_12810 0.77 -0.7
2,986,700 + CA264_12810 0.77 -0.1
2,986,806 - CA264_12810 0.87 -2.1
2,986,869 + -0.2
2,986,910 + -1.8
2,986,910 + -0.8
2,986,973 + -1.4
2,986,973 + -0.3
2,986,974 - -0.8
2,986,974 - -0.8
2,986,974 - -0.8
2,986,976 + +0.0
2,987,014 + -0.2
2,987,015 - -0.3
2,987,022 - -0.9
2,987,022 - -0.5
2,987,022 - -0.7
2,987,024 + -0.3
2,987,024 + -0.4
2,987,043 + +0.0
2,987,043 + -1.8
2,987,044 - -0.8
2,987,048 - -0.4
2,987,051 + -0.1
2,987,103 + -0.5
2,987,104 - -0.6
2,987,109 + -0.7
2,987,186 - -0.1
2,987,282 - +0.2
2,987,309 - +0.1
2,987,350 - -0.5
2,987,351 + -0.7
2,987,351 + -1.2
2,987,352 - +0.0
2,987,352 - -0.1
2,987,377 - -1.0
2,987,411 + -2.2
2,987,412 - +0.4
2,987,415 + +0.1
2,987,440 + -1.1
2,987,442 + -1.9
2,987,464 - +1.7
2,987,527 + -0.3
2,987,533 + CA264_12815 0.10 -0.2
2,987,619 + CA264_12815 0.19 -0.2
2,987,620 - CA264_12815 0.19 -0.2
2,987,745 - CA264_12815 0.31 -0.4
2,987,767 + CA264_12815 0.34 -0.4
2,987,810 + CA264_12815 0.38 -1.0
2,987,810 + CA264_12815 0.38 -0.5
2,987,810 + CA264_12815 0.38 -1.7
2,987,811 - CA264_12815 0.38 -0.4
2,987,962 + CA264_12815 0.53 -0.9
2,987,965 + CA264_12815 0.53 -1.2
2,988,044 + CA264_12815 0.61 -0.4
2,988,045 - CA264_12815 0.61 -0.2
2,988,054 + CA264_12815 0.62 -0.9
2,988,055 - CA264_12815 0.62 -1.1
2,988,129 - CA264_12815 0.69 +1.2
2,988,145 - CA264_12815 0.71 -0.3
2,988,197 + CA264_12815 0.76 -1.7
2,988,198 - CA264_12815 0.76 -0.5
2,988,227 + CA264_12815 0.79 -0.6
2,988,227 + CA264_12815 0.79 -1.2
2,988,313 - CA264_12815 0.88 -0.4
2,988,322 - CA264_12815 0.89 -2.1
2,988,372 + -1.1
2,988,372 + -2.2
2,988,408 + -2.0
2,988,459 - -1.3
2,988,476 - -0.5
2,988,479 - +0.4
2,988,547 + +0.1
2,988,548 - +0.3
2,988,623 + -0.1
2,988,623 + -0.7
2,988,623 + -0.5
2,988,623 + -1.2
2,988,623 + +0.1
2,988,623 + -0.4
2,988,623 + -0.2
2,988,624 - -3.1
2,988,624 - +0.1
2,988,624 - +1.1
2,988,624 - +0.4
2,988,624 - -1.0
2,988,626 - +0.1
2,988,651 + -0.9
2,988,712 - CA264_12820 0.10 -0.3
2,988,731 + CA264_12820 0.12 -0.9
2,988,732 - CA264_12820 0.12 +0.0
2,988,732 - CA264_12820 0.12 -1.1
2,988,734 - CA264_12820 0.12 -0.4
2,988,754 + CA264_12820 0.14 -1.8
2,988,754 + CA264_12820 0.14 +0.1
2,988,825 - CA264_12820 0.20 +0.4
2,988,842 - CA264_12820 0.22 -0.6
2,988,849 + CA264_12820 0.22 -0.7
2,988,850 - CA264_12820 0.22 -0.2
2,988,850 - CA264_12820 0.22 -0.7
2,989,068 - CA264_12820 0.41 +0.2
2,989,095 + CA264_12820 0.44 -1.1
2,989,123 + CA264_12820 0.46 +0.8
2,989,124 - CA264_12820 0.46 -1.0
2,989,127 + CA264_12820 0.46 -1.0
2,989,127 + CA264_12820 0.46 +0.4
2,989,132 + CA264_12820 0.47 -2.4
2,989,132 + CA264_12820 0.47 -1.3
2,989,132 + CA264_12820 0.47 -0.9
2,989,133 - CA264_12820 0.47 +0.7
2,989,133 - CA264_12820 0.47 -0.3
2,989,185 - CA264_12820 0.51 -0.3
2,989,195 + CA264_12820 0.52 +0.8
2,989,195 + CA264_12820 0.52 -1.2
2,989,195 + CA264_12820 0.52 -0.7
2,989,196 - CA264_12820 0.52 -0.6
2,989,235 - CA264_12820 0.56 -0.3
2,989,290 - CA264_12820 0.61 -1.4
2,989,304 + CA264_12820 0.62 -0.7
2,989,322 + CA264_12820 0.63 -0.4
2,989,375 + CA264_12820 0.68 -1.0
2,989,410 + CA264_12820 0.71 -0.8
2,989,410 + CA264_12820 0.71 -1.5
2,989,411 - CA264_12820 0.71 -0.3

Or see this region's nucleotide sequence