Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10645

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10635 and CA264_10640 are separated by 155 nucleotidesCA264_10640 and CA264_10645 are separated by 386 nucleotidesCA264_10645 and CA264_10650 are separated by 300 nucleotidesCA264_10650 and CA264_10655 are separated by 86 nucleotides CA264_10635: CA264_10635 - NADPH:quinone reductase, at 2,458,109 to 2,459,107 _10635 CA264_10640: CA264_10640 - transcriptional regulator, at 2,459,263 to 2,459,616 _10640 CA264_10645: CA264_10645 - hypothetical protein, at 2,460,003 to 2,461,289 _10645 CA264_10650: CA264_10650 - hypothetical protein, at 2,461,590 to 2,462,015 _10650 CA264_10655: CA264_10655 - hypothetical protein, at 2,462,102 to 2,462,824 _10655 Position (kb) 2460 2461 2462Strain fitness (log2 ratio) -2 -1 0 1 2at 2459.012 kb on - strandat 2459.108 kb on + strandat 2459.114 kb on - strandat 2459.135 kb on + strandat 2459.221 kb on - strandat 2459.239 kb on - strandat 2459.341 kb on + strand, within CA264_10640at 2459.342 kb on - strand, within CA264_10640at 2459.362 kb on + strand, within CA264_10640at 2459.379 kb on + strand, within CA264_10640at 2459.424 kb on + strand, within CA264_10640at 2459.425 kb on - strand, within CA264_10640at 2459.471 kb on + strand, within CA264_10640at 2459.471 kb on + strand, within CA264_10640at 2459.472 kb on - strand, within CA264_10640at 2459.487 kb on - strand, within CA264_10640at 2459.510 kb on + strand, within CA264_10640at 2459.510 kb on + strand, within CA264_10640at 2459.515 kb on + strand, within CA264_10640at 2459.516 kb on - strand, within CA264_10640at 2459.516 kb on - strand, within CA264_10640at 2459.614 kb on + strandat 2459.618 kb on + strandat 2459.656 kb on - strandat 2459.658 kb on + strandat 2459.658 kb on + strandat 2459.658 kb on + strandat 2459.663 kb on + strandat 2459.670 kb on + strandat 2459.670 kb on + strandat 2459.671 kb on - strandat 2459.671 kb on - strandat 2459.671 kb on - strandat 2459.688 kb on + strandat 2459.738 kb on + strandat 2459.739 kb on - strandat 2459.750 kb on + strandat 2459.757 kb on + strandat 2459.757 kb on + strandat 2459.817 kb on - strandat 2459.840 kb on - strandat 2459.845 kb on + strandat 2459.850 kb on - strandat 2459.850 kb on - strandat 2459.850 kb on - strandat 2459.850 kb on - strandat 2459.861 kb on - strandat 2459.861 kb on - strandat 2459.863 kb on + strandat 2459.864 kb on - strandat 2459.864 kb on - strandat 2459.868 kb on - strandat 2459.874 kb on - strandat 2459.915 kb on - strandat 2459.990 kb on + strandat 2459.994 kb on - strandat 2459.999 kb on + strandat 2459.999 kb on + strandat 2460.000 kb on - strandat 2460.000 kb on - strandat 2460.093 kb on + strandat 2460.185 kb on + strand, within CA264_10645at 2460.186 kb on - strand, within CA264_10645at 2460.202 kb on - strand, within CA264_10645at 2460.220 kb on + strand, within CA264_10645at 2460.265 kb on - strand, within CA264_10645at 2460.266 kb on + strand, within CA264_10645at 2460.267 kb on - strand, within CA264_10645at 2460.267 kb on - strand, within CA264_10645at 2460.282 kb on - strand, within CA264_10645at 2460.293 kb on + strand, within CA264_10645at 2460.308 kb on + strand, within CA264_10645at 2460.313 kb on - strand, within CA264_10645at 2460.313 kb on - strand, within CA264_10645at 2460.313 kb on - strand, within CA264_10645at 2460.315 kb on + strand, within CA264_10645at 2460.315 kb on + strand, within CA264_10645at 2460.316 kb on - strand, within CA264_10645at 2460.334 kb on + strand, within CA264_10645at 2460.334 kb on + strand, within CA264_10645at 2460.335 kb on - strand, within CA264_10645at 2460.352 kb on - strand, within CA264_10645at 2460.375 kb on - strand, within CA264_10645at 2460.375 kb on - strand, within CA264_10645at 2460.384 kb on + strand, within CA264_10645at 2460.384 kb on + strand, within CA264_10645at 2460.384 kb on + strand, within CA264_10645at 2460.385 kb on - strand, within CA264_10645at 2460.385 kb on - strand, within CA264_10645at 2460.483 kb on + strand, within CA264_10645at 2460.512 kb on - strand, within CA264_10645at 2460.586 kb on - strand, within CA264_10645at 2460.639 kb on + strand, within CA264_10645at 2460.642 kb on + strand, within CA264_10645at 2460.650 kb on + strand, within CA264_10645at 2460.651 kb on - strand, within CA264_10645at 2460.707 kb on + strand, within CA264_10645at 2460.753 kb on + strand, within CA264_10645at 2460.848 kb on + strand, within CA264_10645at 2460.852 kb on + strand, within CA264_10645at 2460.852 kb on + strand, within CA264_10645at 2460.870 kb on + strand, within CA264_10645at 2460.892 kb on + strand, within CA264_10645at 2460.938 kb on + strand, within CA264_10645at 2460.938 kb on + strand, within CA264_10645at 2460.961 kb on - strand, within CA264_10645at 2461.130 kb on + strand, within CA264_10645at 2461.165 kb on + strandat 2461.231 kb on + strandat 2461.231 kb on + strandat 2461.232 kb on - strandat 2461.286 kb on - strandat 2461.286 kb on - strandat 2461.310 kb on + strandat 2461.311 kb on - strandat 2461.311 kb on - strandat 2461.460 kb on + strandat 2461.461 kb on - strandat 2461.487 kb on - strandat 2461.508 kb on + strandat 2461.567 kb on + strandat 2461.572 kb on + strandat 2461.590 kb on - strandat 2461.604 kb on - strandat 2461.708 kb on + strand, within CA264_10650at 2461.728 kb on - strand, within CA264_10650at 2461.749 kb on - strand, within CA264_10650at 2461.754 kb on - strand, within CA264_10650at 2461.774 kb on + strand, within CA264_10650at 2461.807 kb on + strand, within CA264_10650at 2461.808 kb on - strand, within CA264_10650at 2461.817 kb on - strand, within CA264_10650at 2461.817 kb on - strand, within CA264_10650at 2461.871 kb on - strand, within CA264_10650at 2461.875 kb on - strand, within CA264_10650at 2461.944 kb on + strand, within CA264_10650at 2461.944 kb on + strand, within CA264_10650at 2461.944 kb on + strand, within CA264_10650at 2461.946 kb on + strand, within CA264_10650at 2461.982 kb on - strandat 2462.013 kb on + strandat 2462.032 kb on - strandat 2462.115 kb on + strandat 2462.184 kb on + strand, within CA264_10655at 2462.276 kb on + strand, within CA264_10655

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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2,459,012 - -0.2
2,459,108 + -1.2
2,459,114 - +0.8
2,459,135 + -0.8
2,459,221 - -0.3
2,459,239 - +0.2
2,459,341 + CA264_10640 0.22 -0.3
2,459,342 - CA264_10640 0.22 +0.3
2,459,362 + CA264_10640 0.28 +0.2
2,459,379 + CA264_10640 0.33 -1.4
2,459,424 + CA264_10640 0.45 -0.8
2,459,425 - CA264_10640 0.46 -0.8
2,459,471 + CA264_10640 0.59 +0.5
2,459,471 + CA264_10640 0.59 -0.6
2,459,472 - CA264_10640 0.59 -1.2
2,459,487 - CA264_10640 0.63 -1.0
2,459,510 + CA264_10640 0.70 +0.4
2,459,510 + CA264_10640 0.70 -0.3
2,459,515 + CA264_10640 0.71 +1.0
2,459,516 - CA264_10640 0.71 +0.3
2,459,516 - CA264_10640 0.71 -0.1
2,459,614 + +0.2
2,459,618 + +0.8
2,459,656 - -0.0
2,459,658 + -0.5
2,459,658 + -0.6
2,459,658 + +0.2
2,459,663 + +0.2
2,459,670 + -0.9
2,459,670 + +1.9
2,459,671 - +0.7
2,459,671 - -1.0
2,459,671 - -0.9
2,459,688 + +0.8
2,459,738 + +0.0
2,459,739 - -1.7
2,459,750 + -0.3
2,459,757 + -0.4
2,459,757 + +0.1
2,459,817 - -0.7
2,459,840 - -1.8
2,459,845 + -1.2
2,459,850 - -1.5
2,459,850 - +1.0
2,459,850 - +0.6
2,459,850 - +0.7
2,459,861 - +0.5
2,459,861 - +0.5
2,459,863 + -0.8
2,459,864 - +0.3
2,459,864 - +0.1
2,459,868 - -0.6
2,459,874 - +0.1
2,459,915 - +1.3
2,459,990 + +0.3
2,459,994 - +0.1
2,459,999 + -0.6
2,459,999 + -0.6
2,460,000 - +0.1
2,460,000 - -1.2
2,460,093 + +0.0
2,460,185 + CA264_10645 0.14 +0.6
2,460,186 - CA264_10645 0.14 -0.5
2,460,202 - CA264_10645 0.15 -1.4
2,460,220 + CA264_10645 0.17 -0.2
2,460,265 - CA264_10645 0.20 +0.3
2,460,266 + CA264_10645 0.20 -1.0
2,460,267 - CA264_10645 0.21 -1.5
2,460,267 - CA264_10645 0.21 +1.1
2,460,282 - CA264_10645 0.22 -0.7
2,460,293 + CA264_10645 0.23 +0.3
2,460,308 + CA264_10645 0.24 -0.5
2,460,313 - CA264_10645 0.24 +0.0
2,460,313 - CA264_10645 0.24 -0.6
2,460,313 - CA264_10645 0.24 +0.2
2,460,315 + CA264_10645 0.24 -0.3
2,460,315 + CA264_10645 0.24 +2.0
2,460,316 - CA264_10645 0.24 -1.6
2,460,334 + CA264_10645 0.26 -0.1
2,460,334 + CA264_10645 0.26 -1.1
2,460,335 - CA264_10645 0.26 +0.2
2,460,352 - CA264_10645 0.27 +0.1
2,460,375 - CA264_10645 0.29 -0.1
2,460,375 - CA264_10645 0.29 +1.5
2,460,384 + CA264_10645 0.30 +0.4
2,460,384 + CA264_10645 0.30 +0.9
2,460,384 + CA264_10645 0.30 +0.2
2,460,385 - CA264_10645 0.30 -0.3
2,460,385 - CA264_10645 0.30 -0.2
2,460,483 + CA264_10645 0.37 +0.1
2,460,512 - CA264_10645 0.40 +0.1
2,460,586 - CA264_10645 0.45 +1.9
2,460,639 + CA264_10645 0.49 +0.7
2,460,642 + CA264_10645 0.50 +0.5
2,460,650 + CA264_10645 0.50 +0.4
2,460,651 - CA264_10645 0.50 +1.7
2,460,707 + CA264_10645 0.55 -0.2
2,460,753 + CA264_10645 0.58 -0.2
2,460,848 + CA264_10645 0.66 -0.3
2,460,852 + CA264_10645 0.66 +0.9
2,460,852 + CA264_10645 0.66 -1.1
2,460,870 + CA264_10645 0.67 -0.0
2,460,892 + CA264_10645 0.69 +0.7
2,460,938 + CA264_10645 0.73 +0.4
2,460,938 + CA264_10645 0.73 -0.3
2,460,961 - CA264_10645 0.74 -0.5
2,461,130 + CA264_10645 0.88 +0.1
2,461,165 + -0.3
2,461,231 + -0.2
2,461,231 + +0.2
2,461,232 - +0.5
2,461,286 - -0.7
2,461,286 - -0.4
2,461,310 + +0.2
2,461,311 - +0.0
2,461,311 - -0.5
2,461,460 + -1.1
2,461,461 - +0.9
2,461,487 - -0.0
2,461,508 + +0.2
2,461,567 + -0.8
2,461,572 + -2.0
2,461,590 - -0.9
2,461,604 - -2.0
2,461,708 + CA264_10650 0.28 +0.1
2,461,728 - CA264_10650 0.32 -0.5
2,461,749 - CA264_10650 0.37 +0.1
2,461,754 - CA264_10650 0.38 -0.8
2,461,774 + CA264_10650 0.43 -0.6
2,461,807 + CA264_10650 0.51 -0.1
2,461,808 - CA264_10650 0.51 -0.3
2,461,817 - CA264_10650 0.53 -1.8
2,461,817 - CA264_10650 0.53 -0.0
2,461,871 - CA264_10650 0.66 +2.1
2,461,875 - CA264_10650 0.67 -0.7
2,461,944 + CA264_10650 0.83 -0.0
2,461,944 + CA264_10650 0.83 -0.0
2,461,944 + CA264_10650 0.83 +0.2
2,461,946 + CA264_10650 0.84 -0.2
2,461,982 - +0.5
2,462,013 + -0.5
2,462,032 - +0.3
2,462,115 + +0.4
2,462,184 + CA264_10655 0.11 +0.7
2,462,276 + CA264_10655 0.24 -0.3

Or see this region's nucleotide sequence