Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08815

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08810 and CA264_08815 are separated by 214 nucleotidesCA264_08815 and CA264_08820 are separated by 209 nucleotidesCA264_08820 and CA264_08825 are separated by 59 nucleotides CA264_08810: CA264_08810 - aminopeptidase, at 2,056,055 to 2,058,658 _08810 CA264_08815: CA264_08815 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, at 2,058,873 to 2,060,549 _08815 CA264_08820: CA264_08820 - histidine phosphatase family protein, at 2,060,759 to 2,061,388 _08820 CA264_08825: CA264_08825 - thioesterase, at 2,061,448 to 2,061,867 _08825 Position (kb) 2058 2059 2060 2061Strain fitness (log2 ratio) -2 -1 0 1at 2057.922 kb on + strand, within CA264_08810at 2057.922 kb on + strand, within CA264_08810at 2057.923 kb on - strand, within CA264_08810at 2057.954 kb on + strand, within CA264_08810at 2058.074 kb on + strand, within CA264_08810at 2058.075 kb on - strand, within CA264_08810at 2058.082 kb on + strand, within CA264_08810at 2058.083 kb on - strand, within CA264_08810at 2058.173 kb on + strand, within CA264_08810at 2058.173 kb on + strand, within CA264_08810at 2058.175 kb on + strand, within CA264_08810at 2058.175 kb on + strand, within CA264_08810at 2058.175 kb on + strand, within CA264_08810at 2058.175 kb on + strand, within CA264_08810at 2058.175 kb on + strand, within CA264_08810at 2058.175 kb on + strand, within CA264_08810at 2058.175 kb on + strand, within CA264_08810at 2058.175 kb on + strand, within CA264_08810at 2058.176 kb on - strand, within CA264_08810at 2058.431 kb on + strandat 2058.454 kb on - strandat 2058.481 kb on + strandat 2058.581 kb on + strandat 2058.656 kb on + strandat 2058.707 kb on - strandat 2058.790 kb on - strandat 2058.790 kb on - strandat 2058.854 kb on - strandat 2060.577 kb on - strandat 2060.586 kb on - strandat 2060.659 kb on + strandat 2060.659 kb on + strandat 2060.682 kb on - strandat 2060.694 kb on + strandat 2060.713 kb on + strandat 2060.728 kb on - strandat 2060.749 kb on + strandat 2060.827 kb on + strand, within CA264_08820at 2060.827 kb on + strand, within CA264_08820at 2060.829 kb on + strand, within CA264_08820at 2060.830 kb on - strand, within CA264_08820at 2060.830 kb on - strand, within CA264_08820at 2060.841 kb on + strand, within CA264_08820at 2060.841 kb on + strand, within CA264_08820at 2061.084 kb on + strand, within CA264_08820at 2061.084 kb on + strand, within CA264_08820at 2061.084 kb on + strand, within CA264_08820at 2061.085 kb on - strand, within CA264_08820at 2061.085 kb on - strand, within CA264_08820at 2061.181 kb on + strand, within CA264_08820at 2061.181 kb on + strand, within CA264_08820at 2061.182 kb on - strand, within CA264_08820at 2061.200 kb on + strand, within CA264_08820at 2061.201 kb on - strand, within CA264_08820at 2061.226 kb on - strand, within CA264_08820at 2061.226 kb on - strand, within CA264_08820at 2061.233 kb on - strand, within CA264_08820at 2061.233 kb on - strand, within CA264_08820at 2061.251 kb on - strand, within CA264_08820at 2061.251 kb on - strand, within CA264_08820at 2061.251 kb on - strand, within CA264_08820at 2061.251 kb on - strand, within CA264_08820at 2061.252 kb on + strand, within CA264_08820at 2061.328 kb on + strandat 2061.329 kb on - strandat 2061.341 kb on - strandat 2061.342 kb on + strandat 2061.343 kb on - strandat 2061.369 kb on + strandat 2061.369 kb on + strandat 2061.371 kb on + strandat 2061.372 kb on - strandat 2061.380 kb on - strandat 2061.411 kb on + strandat 2061.411 kb on + strandat 2061.411 kb on + strandat 2061.416 kb on - strandat 2061.421 kb on + strandat 2061.448 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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2,057,922 + CA264_08810 0.72 -0.4
2,057,922 + CA264_08810 0.72 -0.2
2,057,923 - CA264_08810 0.72 -1.1
2,057,954 + CA264_08810 0.73 -0.3
2,058,074 + CA264_08810 0.78 -0.3
2,058,075 - CA264_08810 0.78 +0.3
2,058,082 + CA264_08810 0.78 +0.1
2,058,083 - CA264_08810 0.78 -0.3
2,058,173 + CA264_08810 0.81 +0.6
2,058,173 + CA264_08810 0.81 -0.6
2,058,175 + CA264_08810 0.81 -0.2
2,058,175 + CA264_08810 0.81 +0.2
2,058,175 + CA264_08810 0.81 -0.2
2,058,175 + CA264_08810 0.81 -0.0
2,058,175 + CA264_08810 0.81 -0.1
2,058,175 + CA264_08810 0.81 -1.7
2,058,175 + CA264_08810 0.81 -0.5
2,058,175 + CA264_08810 0.81 -1.8
2,058,176 - CA264_08810 0.81 +0.9
2,058,431 + -0.1
2,058,454 - +0.3
2,058,481 + -1.0
2,058,581 + -0.2
2,058,656 + -1.1
2,058,707 - +0.4
2,058,790 - -0.2
2,058,790 - +1.5
2,058,854 - -1.3
2,060,577 - +0.2
2,060,586 - +0.2
2,060,659 + -0.3
2,060,659 + -0.1
2,060,682 - +1.7
2,060,694 + +0.7
2,060,713 + -0.2
2,060,728 - -0.6
2,060,749 + -1.0
2,060,827 + CA264_08820 0.11 +0.2
2,060,827 + CA264_08820 0.11 -1.6
2,060,829 + CA264_08820 0.11 +0.1
2,060,830 - CA264_08820 0.11 +0.6
2,060,830 - CA264_08820 0.11 +0.1
2,060,841 + CA264_08820 0.13 -0.2
2,060,841 + CA264_08820 0.13 +1.1
2,061,084 + CA264_08820 0.52 -1.3
2,061,084 + CA264_08820 0.52 -0.3
2,061,084 + CA264_08820 0.52 -0.6
2,061,085 - CA264_08820 0.52 +0.0
2,061,085 - CA264_08820 0.52 -0.1
2,061,181 + CA264_08820 0.67 -0.0
2,061,181 + CA264_08820 0.67 -2.1
2,061,182 - CA264_08820 0.67 +0.5
2,061,200 + CA264_08820 0.70 +0.0
2,061,201 - CA264_08820 0.70 -0.4
2,061,226 - CA264_08820 0.74 +0.1
2,061,226 - CA264_08820 0.74 -0.0
2,061,233 - CA264_08820 0.75 -1.5
2,061,233 - CA264_08820 0.75 +0.7
2,061,251 - CA264_08820 0.78 -0.7
2,061,251 - CA264_08820 0.78 -0.1
2,061,251 - CA264_08820 0.78 +0.3
2,061,251 - CA264_08820 0.78 -0.3
2,061,252 + CA264_08820 0.78 +0.5
2,061,328 + +0.6
2,061,329 - +0.0
2,061,341 - -1.9
2,061,342 + +0.1
2,061,343 - +0.2
2,061,369 + +0.3
2,061,369 + -0.6
2,061,371 + +0.3
2,061,372 - -0.1
2,061,380 - -0.0
2,061,411 + -0.6
2,061,411 + -0.2
2,061,411 + -0.9
2,061,416 - -0.3
2,061,421 + -0.6
2,061,448 - +0.1

Or see this region's nucleotide sequence