Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08080

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08070 and CA264_08075 overlap by 7 nucleotidesCA264_08075 and CA264_08080 are separated by 99 nucleotidesCA264_08080 and CA264_08085 are separated by 98 nucleotidesCA264_08085 and CA264_08090 are separated by 189 nucleotides CA264_08070: CA264_08070 - gliding motility-associated ABC transporter substrate-binding protein GldG, at 1,863,663 to 1,865,354 _08070 CA264_08075: CA264_08075 - gliding motility-associated ABC transporter permease subunit GldF, at 1,865,348 to 1,866,076 _08075 CA264_08080: CA264_08080 - gliding motility-associated ABC transporter ATP-binding subunit GldA, at 1,866,176 to 1,867,090 _08080 CA264_08085: CA264_08085 - short-chain dehydrogenase, at 1,867,189 to 1,867,893 _08085 CA264_08090: CA264_08090 - short-chain dehydrogenase, at 1,868,083 to 1,868,790 _08090 Position (kb) 1866 1867 1868Strain fitness (log2 ratio) -2 -1 0 1 2at 1865.286 kb on - strandat 1865.316 kb on - strandat 1865.316 kb on - strandat 1865.511 kb on - strand, within CA264_08075at 1865.544 kb on + strand, within CA264_08075at 1865.544 kb on + strand, within CA264_08075at 1865.545 kb on - strand, within CA264_08075at 1865.730 kb on + strand, within CA264_08075at 1865.795 kb on - strand, within CA264_08075at 1865.835 kb on - strand, within CA264_08075at 1865.917 kb on + strand, within CA264_08075at 1865.922 kb on - strand, within CA264_08075at 1866.019 kb on + strandat 1866.079 kb on - strandat 1866.085 kb on - strandat 1866.808 kb on - strand, within CA264_08080at 1866.819 kb on + strand, within CA264_08080at 1866.819 kb on + strand, within CA264_08080at 1866.819 kb on + strand, within CA264_08080at 1866.820 kb on - strand, within CA264_08080at 1866.820 kb on - strand, within CA264_08080at 1866.820 kb on - strand, within CA264_08080at 1866.820 kb on - strand, within CA264_08080at 1866.820 kb on - strand, within CA264_08080at 1866.820 kb on - strand, within CA264_08080at 1866.820 kb on - strand, within CA264_08080at 1866.820 kb on - strand, within CA264_08080at 1866.823 kb on + strand, within CA264_08080at 1867.077 kb on - strandat 1867.093 kb on - strandat 1867.093 kb on - strandat 1867.093 kb on - strandat 1867.093 kb on - strandat 1867.094 kb on + strandat 1867.095 kb on - strandat 1867.097 kb on + strandat 1867.098 kb on - strandat 1867.106 kb on + strandat 1867.107 kb on - strandat 1867.120 kb on + strandat 1867.121 kb on - strandat 1867.187 kb on - strandat 1867.190 kb on + strandat 1867.191 kb on - strandat 1867.233 kb on + strandat 1867.333 kb on + strand, within CA264_08085at 1867.334 kb on - strand, within CA264_08085at 1867.381 kb on + strand, within CA264_08085at 1867.495 kb on - strand, within CA264_08085at 1867.512 kb on + strand, within CA264_08085at 1867.658 kb on - strand, within CA264_08085at 1867.851 kb on + strandat 1867.854 kb on + strandat 1867.952 kb on + strandat 1867.986 kb on + strandat 1867.987 kb on - strandat 1867.987 kb on - strandat 1867.995 kb on + strandat 1868.046 kb on - strandat 1868.071 kb on + strandat 1868.078 kb on - strandat 1868.078 kb on - strandat 1868.085 kb on - strandat 1868.085 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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1,865,286 - -0.8
1,865,316 - -1.5
1,865,316 - -0.8
1,865,511 - CA264_08075 0.22 +0.4
1,865,544 + CA264_08075 0.27 -2.6
1,865,544 + CA264_08075 0.27 -1.0
1,865,545 - CA264_08075 0.27 -0.6
1,865,730 + CA264_08075 0.52 -0.6
1,865,795 - CA264_08075 0.61 -1.9
1,865,835 - CA264_08075 0.67 -1.6
1,865,917 + CA264_08075 0.78 -1.1
1,865,922 - CA264_08075 0.79 -1.3
1,866,019 + -1.8
1,866,079 - +0.2
1,866,085 - +0.4
1,866,808 - CA264_08080 0.69 -1.1
1,866,819 + CA264_08080 0.70 -0.8
1,866,819 + CA264_08080 0.70 -0.6
1,866,819 + CA264_08080 0.70 -0.3
1,866,820 - CA264_08080 0.70 +0.8
1,866,820 - CA264_08080 0.70 -0.6
1,866,820 - CA264_08080 0.70 -1.4
1,866,820 - CA264_08080 0.70 -0.6
1,866,820 - CA264_08080 0.70 -0.9
1,866,820 - CA264_08080 0.70 -1.0
1,866,820 - CA264_08080 0.70 -1.8
1,866,820 - CA264_08080 0.70 -0.8
1,866,823 + CA264_08080 0.71 +1.5
1,867,077 - -0.1
1,867,093 - +0.6
1,867,093 - +0.1
1,867,093 - -0.1
1,867,093 - +2.2
1,867,094 + -1.3
1,867,095 - -1.8
1,867,097 + -0.2
1,867,098 - -0.1
1,867,106 + -1.1
1,867,107 - +0.8
1,867,120 + -0.4
1,867,121 - +0.6
1,867,187 - +0.1
1,867,190 + +0.4
1,867,191 - -0.4
1,867,233 + -1.0
1,867,333 + CA264_08085 0.20 +0.8
1,867,334 - CA264_08085 0.21 +0.3
1,867,381 + CA264_08085 0.27 +2.2
1,867,495 - CA264_08085 0.43 -0.1
1,867,512 + CA264_08085 0.46 -0.2
1,867,658 - CA264_08085 0.67 +0.7
1,867,851 + -0.8
1,867,854 + -0.7
1,867,952 + -0.4
1,867,986 + -2.2
1,867,987 - +0.6
1,867,987 - +0.6
1,867,995 + +0.6
1,868,046 - +0.9
1,868,071 + -0.8
1,868,078 - -0.6
1,868,078 - -0.5
1,868,085 - -0.2
1,868,085 - +0.1

Or see this region's nucleotide sequence