Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07160

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07155 and CA264_07160 are separated by 362 nucleotidesCA264_07160 and CA264_07165 are separated by 487 nucleotidesCA264_07165 and CA264_07170 are separated by 79 nucleotides CA264_07155: CA264_07155 - methylmalonyl-CoA mutase, at 1,650,788 to 1,654,174 _07155 CA264_07160: CA264_07160 - FMN-binding glutamate synthase family protein, at 1,654,537 to 1,656,093 _07160 CA264_07165: CA264_07165 - hypothetical protein, at 1,656,581 to 1,656,775 _07165 CA264_07170: CA264_07170 - MFS transporter, at 1,656,855 to 1,658,402 _07170 Position (kb) 1654 1655 1656 1657Strain fitness (log2 ratio) -2 -1 0 1 2at 1653.566 kb on + strand, within CA264_07155at 1653.567 kb on - strand, within CA264_07155at 1653.819 kb on - strand, within CA264_07155at 1653.933 kb on + strandat 1653.949 kb on - strandat 1654.173 kb on - strandat 1654.195 kb on + strandat 1654.195 kb on + strandat 1654.196 kb on - strandat 1654.246 kb on + strandat 1654.263 kb on - strandat 1654.265 kb on - strandat 1654.286 kb on + strandat 1654.286 kb on + strandat 1654.290 kb on + strandat 1654.291 kb on - strandat 1654.297 kb on + strandat 1654.304 kb on + strandat 1654.310 kb on - strandat 1654.311 kb on + strandat 1654.311 kb on + strandat 1654.312 kb on - strandat 1654.319 kb on - strandat 1654.357 kb on - strandat 1654.384 kb on - strandat 1654.439 kb on + strandat 1654.440 kb on - strandat 1654.531 kb on - strandat 1654.539 kb on - strandat 1654.542 kb on + strandat 1654.548 kb on + strandat 1654.550 kb on + strandat 1654.550 kb on + strandat 1654.551 kb on - strandat 1654.551 kb on - strandat 1654.551 kb on - strandat 1654.551 kb on - strandat 1654.562 kb on - strandat 1654.593 kb on - strandat 1654.837 kb on - strand, within CA264_07160at 1654.872 kb on - strand, within CA264_07160at 1654.921 kb on + strand, within CA264_07160at 1654.936 kb on + strand, within CA264_07160at 1654.967 kb on + strand, within CA264_07160at 1654.968 kb on - strand, within CA264_07160at 1655.007 kb on - strand, within CA264_07160at 1655.221 kb on - strand, within CA264_07160at 1655.327 kb on - strand, within CA264_07160at 1655.365 kb on + strand, within CA264_07160at 1655.365 kb on + strand, within CA264_07160at 1655.366 kb on - strand, within CA264_07160at 1655.453 kb on + strand, within CA264_07160at 1655.614 kb on - strand, within CA264_07160at 1655.619 kb on - strand, within CA264_07160at 1655.619 kb on - strand, within CA264_07160at 1655.633 kb on + strand, within CA264_07160at 1655.633 kb on + strand, within CA264_07160at 1655.853 kb on - strand, within CA264_07160at 1655.874 kb on + strand, within CA264_07160at 1655.951 kb on + strandat 1655.952 kb on - strandat 1655.987 kb on - strandat 1655.996 kb on - strandat 1656.035 kb on - strandat 1656.057 kb on - strandat 1656.057 kb on - strandat 1656.088 kb on - strandat 1656.097 kb on - strandat 1656.100 kb on + strandat 1656.101 kb on - strandat 1656.101 kb on - strandat 1656.105 kb on - strandat 1656.110 kb on + strandat 1656.110 kb on + strandat 1656.111 kb on - strandat 1656.119 kb on + strandat 1656.215 kb on + strandat 1656.315 kb on + strandat 1656.468 kb on + strandat 1656.468 kb on + strandat 1656.469 kb on - strandat 1656.498 kb on + strandat 1656.641 kb on - strand, within CA264_07165at 1656.652 kb on + strand, within CA264_07165at 1656.718 kb on - strand, within CA264_07165at 1656.758 kb on + strandat 1656.768 kb on - strandat 1656.768 kb on - strandat 1656.793 kb on + strandat 1656.794 kb on - strandat 1656.797 kb on + strandat 1656.797 kb on + strandat 1656.824 kb on - strandat 1656.824 kb on - strandat 1656.827 kb on + strandat 1656.827 kb on + strandat 1656.827 kb on + strandat 1656.828 kb on - strandat 1656.833 kb on + strandat 1656.856 kb on + strandat 1656.900 kb on + strandat 1656.905 kb on - strandat 1656.949 kb on + strandat 1656.950 kb on - strandat 1656.960 kb on - strandat 1656.962 kb on - strandat 1656.962 kb on - strandat 1656.969 kb on + strandat 1656.970 kb on - strandat 1656.970 kb on - strandat 1656.973 kb on + strandat 1657.007 kb on + strandat 1657.008 kb on - strandat 1657.009 kb on + strandat 1657.030 kb on - strand, within CA264_07170at 1657.040 kb on - strand, within CA264_07170

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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1,653,566 + CA264_07155 0.82 +0.6
1,653,567 - CA264_07155 0.82 -0.6
1,653,819 - CA264_07155 0.89 -2.1
1,653,933 + -0.8
1,653,949 - +0.2
1,654,173 - +0.6
1,654,195 + -0.3
1,654,195 + -0.7
1,654,196 - +0.0
1,654,246 + +0.0
1,654,263 - -0.1
1,654,265 - -0.3
1,654,286 + +0.1
1,654,286 + -0.8
1,654,290 + -1.0
1,654,291 - +1.4
1,654,297 + +0.2
1,654,304 + -0.6
1,654,310 - +0.3
1,654,311 + +0.2
1,654,311 + -0.1
1,654,312 - -1.1
1,654,319 - -0.8
1,654,357 - -0.6
1,654,384 - +0.9
1,654,439 + +0.1
1,654,440 - -0.6
1,654,531 - +0.1
1,654,539 - +0.1
1,654,542 + -0.4
1,654,548 + +0.8
1,654,550 + -0.6
1,654,550 + +0.4
1,654,551 - +0.6
1,654,551 - -1.3
1,654,551 - +0.1
1,654,551 - +0.2
1,654,562 - +0.8
1,654,593 - -0.5
1,654,837 - CA264_07160 0.19 -0.8
1,654,872 - CA264_07160 0.22 +2.2
1,654,921 + CA264_07160 0.25 -0.1
1,654,936 + CA264_07160 0.26 +0.4
1,654,967 + CA264_07160 0.28 -0.1
1,654,968 - CA264_07160 0.28 -0.9
1,655,007 - CA264_07160 0.30 -0.3
1,655,221 - CA264_07160 0.44 -0.8
1,655,327 - CA264_07160 0.51 +0.2
1,655,365 + CA264_07160 0.53 +0.1
1,655,365 + CA264_07160 0.53 +0.2
1,655,366 - CA264_07160 0.53 +0.3
1,655,453 + CA264_07160 0.59 +0.2
1,655,614 - CA264_07160 0.69 +0.4
1,655,619 - CA264_07160 0.69 +0.8
1,655,619 - CA264_07160 0.69 -1.7
1,655,633 + CA264_07160 0.70 +0.1
1,655,633 + CA264_07160 0.70 +1.1
1,655,853 - CA264_07160 0.85 +0.8
1,655,874 + CA264_07160 0.86 -0.3
1,655,951 + -0.9
1,655,952 - +0.5
1,655,987 - -0.3
1,655,996 - -0.2
1,656,035 - -1.0
1,656,057 - +1.0
1,656,057 - -0.1
1,656,088 - -1.4
1,656,097 - -0.7
1,656,100 + +0.1
1,656,101 - +1.0
1,656,101 - +0.6
1,656,105 - -0.1
1,656,110 + -0.3
1,656,110 + -0.1
1,656,111 - +0.2
1,656,119 + -0.7
1,656,215 + -0.4
1,656,315 + -0.4
1,656,468 + +0.6
1,656,468 + -0.2
1,656,469 - -0.4
1,656,498 + -0.5
1,656,641 - CA264_07165 0.31 -0.6
1,656,652 + CA264_07165 0.36 -0.1
1,656,718 - CA264_07165 0.70 -0.5
1,656,758 + -0.6
1,656,768 - -0.7
1,656,768 - -0.8
1,656,793 + -0.6
1,656,794 - +0.1
1,656,797 + -0.6
1,656,797 + -0.4
1,656,824 - -1.1
1,656,824 - +0.3
1,656,827 + -0.3
1,656,827 + +0.2
1,656,827 + -0.3
1,656,828 - +0.1
1,656,833 + -0.0
1,656,856 + -0.2
1,656,900 + -0.3
1,656,905 - -0.1
1,656,949 + -0.2
1,656,950 - +0.2
1,656,960 - +0.2
1,656,962 - -0.9
1,656,962 - -0.1
1,656,969 + +1.1
1,656,970 - -0.5
1,656,970 - -0.3
1,656,973 + -0.2
1,657,007 + -0.0
1,657,008 - -1.1
1,657,009 + -0.0
1,657,030 - CA264_07170 0.11 -0.1
1,657,040 - CA264_07170 0.12 -0.8

Or see this region's nucleotide sequence