Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04710

Experiment: m.b. Chloride 750 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_04705 and CA264_04710 are separated by 120 nucleotidesCA264_04710 and CA264_04715 are separated by 111 nucleotidesCA264_04715 and CA264_04720 are separated by 78 nucleotides CA264_04705: CA264_04705 - hypothetical protein, at 1,090,770 to 1,091,711 _04705 CA264_04710: CA264_04710 - SAM-dependent methyltransferase, at 1,091,832 to 1,092,428 _04710 CA264_04715: CA264_04715 - 3-deoxy-8-phosphooctulonate synthase, at 1,092,540 to 1,093,349 _04715 CA264_04720: CA264_04720 - SAM-dependent methyltransferase, at 1,093,428 to 1,094,171 _04720 Position (kb) 1091 1092 1093Strain fitness (log2 ratio) -1 0 1at 1090.846 kb on + strandat 1090.864 kb on + strandat 1090.865 kb on - strand, within CA264_04705at 1090.921 kb on + strand, within CA264_04705at 1090.924 kb on + strand, within CA264_04705at 1090.924 kb on + strand, within CA264_04705at 1090.925 kb on - strand, within CA264_04705at 1090.925 kb on - strand, within CA264_04705at 1091.387 kb on + strand, within CA264_04705at 1091.388 kb on - strand, within CA264_04705at 1091.389 kb on + strand, within CA264_04705at 1091.390 kb on - strand, within CA264_04705at 1091.528 kb on - strand, within CA264_04705at 1091.562 kb on + strand, within CA264_04705at 1091.608 kb on + strand, within CA264_04705at 1091.617 kb on + strandat 1091.671 kb on - strandat 1091.712 kb on - strandat 1091.712 kb on - strandat 1091.712 kb on - strandat 1091.712 kb on - strandat 1091.712 kb on - strandat 1091.712 kb on - strandat 1091.712 kb on - strandat 1091.716 kb on + strandat 1091.716 kb on + strandat 1091.716 kb on + strandat 1091.716 kb on + strandat 1091.717 kb on - strandat 1091.719 kb on - strandat 1091.719 kb on - strandat 1091.719 kb on - strandat 1091.719 kb on - strandat 1091.721 kb on - strandat 1091.721 kb on - strandat 1091.721 kb on - strandat 1091.738 kb on - strandat 1091.742 kb on - strandat 1091.756 kb on - strandat 1091.761 kb on + strandat 1091.802 kb on - strandat 1091.806 kb on - strandat 1091.819 kb on + strandat 1091.825 kb on + strandat 1091.829 kb on + strandat 1091.906 kb on + strand, within CA264_04710at 1091.907 kb on - strand, within CA264_04710at 1092.009 kb on - strand, within CA264_04710at 1092.030 kb on + strand, within CA264_04710at 1092.030 kb on + strand, within CA264_04710at 1092.030 kb on + strand, within CA264_04710at 1092.030 kb on + strand, within CA264_04710at 1092.030 kb on + strand, within CA264_04710at 1092.031 kb on - strand, within CA264_04710at 1092.031 kb on - strand, within CA264_04710at 1092.198 kb on + strand, within CA264_04710at 1092.398 kb on + strandat 1092.401 kb on - strandat 1092.401 kb on - strandat 1092.434 kb on - strandat 1092.477 kb on + strandat 1092.478 kb on - strandat 1092.483 kb on - strandat 1092.488 kb on + strandat 1092.492 kb on + strandat 1092.493 kb on - strandat 1092.523 kb on - strandat 1092.531 kb on - strandat 1093.366 kb on + strandat 1093.367 kb on - strandat 1093.369 kb on - strandat 1093.401 kb on + strandat 1093.402 kb on - strandat 1093.403 kb on + strandat 1093.403 kb on + strandat 1093.408 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
remove
1,090,846 + +0.1
1,090,864 + +0.1
1,090,865 - CA264_04705 0.10 -0.1
1,090,921 + CA264_04705 0.16 +1.0
1,090,924 + CA264_04705 0.16 -0.0
1,090,924 + CA264_04705 0.16 -0.0
1,090,925 - CA264_04705 0.16 -0.4
1,090,925 - CA264_04705 0.16 -1.4
1,091,387 + CA264_04705 0.65 -1.1
1,091,388 - CA264_04705 0.66 -0.5
1,091,389 + CA264_04705 0.66 +1.0
1,091,390 - CA264_04705 0.66 -0.3
1,091,528 - CA264_04705 0.80 -1.3
1,091,562 + CA264_04705 0.84 -0.4
1,091,608 + CA264_04705 0.89 -0.8
1,091,617 + -1.4
1,091,671 - -0.6
1,091,712 - -0.4
1,091,712 - +1.0
1,091,712 - -1.1
1,091,712 - -0.1
1,091,712 - -0.3
1,091,712 - +0.4
1,091,712 - +0.3
1,091,716 + +0.4
1,091,716 + -0.0
1,091,716 + -0.1
1,091,716 + +0.8
1,091,717 - -0.0
1,091,719 - -1.2
1,091,719 - +0.1
1,091,719 - +0.2
1,091,719 - +1.4
1,091,721 - -0.0
1,091,721 - +0.2
1,091,721 - -0.9
1,091,738 - -0.2
1,091,742 - -0.8
1,091,756 - +0.7
1,091,761 + +0.4
1,091,802 - -0.9
1,091,806 - -1.7
1,091,819 + -0.9
1,091,825 + -0.7
1,091,829 + +0.0
1,091,906 + CA264_04710 0.12 -0.6
1,091,907 - CA264_04710 0.13 -0.4
1,092,009 - CA264_04710 0.30 -0.4
1,092,030 + CA264_04710 0.33 +0.3
1,092,030 + CA264_04710 0.33 -0.6
1,092,030 + CA264_04710 0.33 +0.0
1,092,030 + CA264_04710 0.33 -0.6
1,092,030 + CA264_04710 0.33 -1.0
1,092,031 - CA264_04710 0.33 -0.5
1,092,031 - CA264_04710 0.33 -0.4
1,092,198 + CA264_04710 0.61 -1.0
1,092,398 + -0.2
1,092,401 - -0.7
1,092,401 - -0.8
1,092,434 - +0.5
1,092,477 + -0.1
1,092,478 - -0.2
1,092,483 - +0.0
1,092,488 + +0.1
1,092,492 + +0.8
1,092,493 - -0.1
1,092,523 - +0.0
1,092,531 - -0.7
1,093,366 + +0.2
1,093,367 - -0.5
1,093,369 - -0.7
1,093,401 + -0.2
1,093,402 - +0.0
1,093,403 + +0.4
1,093,403 + -0.7
1,093,408 + -0.4

Or see this region's nucleotide sequence