Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04490

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04485 and CA264_04490 are separated by 133 nucleotidesCA264_04490 and CA264_04495 overlap by 4 nucleotides CA264_04485: CA264_04485 - 4-hydroxy-tetrahydrodipicolinate synthase, at 1,035,934 to 1,036,803 _04485 CA264_04490: CA264_04490 - DNA-binding response regulator, at 1,036,937 to 1,037,674 _04490 CA264_04495: CA264_04495 - histidine kinase, at 1,037,671 to 1,038,669 _04495 Position (kb) 1036 1037 1038Strain fitness (log2 ratio) -2 -1 0 1at 1036.815 kb on - strandat 1036.821 kb on + strandat 1036.828 kb on + strandat 1036.835 kb on + strandat 1036.835 kb on + strandat 1036.836 kb on - strandat 1036.839 kb on + strandat 1036.840 kb on - strandat 1036.943 kb on + strandat 1036.944 kb on - strandat 1037.036 kb on + strand, within CA264_04490at 1037.036 kb on + strand, within CA264_04490at 1037.037 kb on - strand, within CA264_04490at 1037.045 kb on + strand, within CA264_04490at 1037.170 kb on + strand, within CA264_04490at 1037.170 kb on + strand, within CA264_04490at 1037.172 kb on + strand, within CA264_04490at 1037.172 kb on + strand, within CA264_04490at 1037.172 kb on + strand, within CA264_04490at 1037.173 kb on - strand, within CA264_04490at 1037.173 kb on - strand, within CA264_04490at 1037.173 kb on - strand, within CA264_04490at 1037.173 kb on - strand, within CA264_04490at 1037.181 kb on - strand, within CA264_04490at 1037.214 kb on - strand, within CA264_04490at 1037.248 kb on + strand, within CA264_04490at 1037.249 kb on - strand, within CA264_04490at 1037.377 kb on + strand, within CA264_04490at 1037.385 kb on + strand, within CA264_04490at 1037.386 kb on - strand, within CA264_04490at 1037.422 kb on - strand, within CA264_04490at 1037.529 kb on - strand, within CA264_04490at 1037.529 kb on - strand, within CA264_04490at 1037.610 kb on - strandat 1037.613 kb on + strandat 1037.613 kb on + strandat 1037.614 kb on - strandat 1037.614 kb on - strandat 1037.614 kb on - strandat 1037.614 kb on - strandat 1037.624 kb on - strandat 1037.674 kb on + strandat 1037.675 kb on - strandat 1037.704 kb on + strandat 1037.720 kb on + strandat 1037.849 kb on - strand, within CA264_04495at 1037.893 kb on + strand, within CA264_04495at 1037.898 kb on + strand, within CA264_04495at 1037.898 kb on + strand, within CA264_04495at 1037.898 kb on + strand, within CA264_04495at 1037.899 kb on - strand, within CA264_04495at 1037.998 kb on + strand, within CA264_04495at 1038.009 kb on + strand, within CA264_04495at 1038.009 kb on + strand, within CA264_04495at 1038.057 kb on + strand, within CA264_04495at 1038.058 kb on - strand, within CA264_04495at 1038.064 kb on - strand, within CA264_04495at 1038.111 kb on - strand, within CA264_04495at 1038.119 kb on + strand, within CA264_04495at 1038.120 kb on - strand, within CA264_04495at 1038.176 kb on + strand, within CA264_04495at 1038.188 kb on + strand, within CA264_04495at 1038.226 kb on + strand, within CA264_04495at 1038.306 kb on - strand, within CA264_04495at 1038.306 kb on - strand, within CA264_04495at 1038.383 kb on + strand, within CA264_04495at 1038.384 kb on - strand, within CA264_04495at 1038.389 kb on + strand, within CA264_04495at 1038.390 kb on - strand, within CA264_04495at 1038.390 kb on - strand, within CA264_04495at 1038.411 kb on + strand, within CA264_04495at 1038.412 kb on - strand, within CA264_04495at 1038.412 kb on - strand, within CA264_04495at 1038.412 kb on - strand, within CA264_04495at 1038.413 kb on + strand, within CA264_04495at 1038.414 kb on - strand, within CA264_04495at 1038.492 kb on - strand, within CA264_04495at 1038.532 kb on + strand, within CA264_04495at 1038.543 kb on + strand, within CA264_04495

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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1,036,815 - +0.7
1,036,821 + +0.6
1,036,828 + +0.5
1,036,835 + +0.1
1,036,835 + +0.1
1,036,836 - +0.6
1,036,839 + -0.5
1,036,840 - -0.8
1,036,943 + +0.7
1,036,944 - +0.5
1,037,036 + CA264_04490 0.13 -1.1
1,037,036 + CA264_04490 0.13 -1.1
1,037,037 - CA264_04490 0.14 -1.6
1,037,045 + CA264_04490 0.15 -0.5
1,037,170 + CA264_04490 0.32 +0.9
1,037,170 + CA264_04490 0.32 +0.1
1,037,172 + CA264_04490 0.32 +1.1
1,037,172 + CA264_04490 0.32 +0.2
1,037,172 + CA264_04490 0.32 +0.3
1,037,173 - CA264_04490 0.32 -0.2
1,037,173 - CA264_04490 0.32 -0.9
1,037,173 - CA264_04490 0.32 +0.1
1,037,173 - CA264_04490 0.32 -0.3
1,037,181 - CA264_04490 0.33 -0.7
1,037,214 - CA264_04490 0.38 +0.4
1,037,248 + CA264_04490 0.42 +0.1
1,037,249 - CA264_04490 0.42 -2.1
1,037,377 + CA264_04490 0.60 +0.2
1,037,385 + CA264_04490 0.61 +0.2
1,037,386 - CA264_04490 0.61 -1.5
1,037,422 - CA264_04490 0.66 -0.5
1,037,529 - CA264_04490 0.80 -0.2
1,037,529 - CA264_04490 0.80 -0.4
1,037,610 - -0.2
1,037,613 + -0.4
1,037,613 + +0.1
1,037,614 - +0.4
1,037,614 - +1.7
1,037,614 - +0.2
1,037,614 - +0.0
1,037,624 - +0.2
1,037,674 + -0.5
1,037,675 - +0.5
1,037,704 + -1.4
1,037,720 + -1.8
1,037,849 - CA264_04495 0.18 -2.2
1,037,893 + CA264_04495 0.22 -1.4
1,037,898 + CA264_04495 0.23 -2.1
1,037,898 + CA264_04495 0.23 +1.2
1,037,898 + CA264_04495 0.23 -0.7
1,037,899 - CA264_04495 0.23 +0.2
1,037,998 + CA264_04495 0.33 -0.2
1,038,009 + CA264_04495 0.34 -2.6
1,038,009 + CA264_04495 0.34 -1.6
1,038,057 + CA264_04495 0.39 -1.2
1,038,058 - CA264_04495 0.39 -0.5
1,038,064 - CA264_04495 0.39 -1.6
1,038,111 - CA264_04495 0.44 -2.0
1,038,119 + CA264_04495 0.45 -1.5
1,038,120 - CA264_04495 0.45 +0.3
1,038,176 + CA264_04495 0.51 -1.7
1,038,188 + CA264_04495 0.52 -0.7
1,038,226 + CA264_04495 0.56 -0.6
1,038,306 - CA264_04495 0.64 -1.9
1,038,306 - CA264_04495 0.64 -1.2
1,038,383 + CA264_04495 0.71 +0.3
1,038,384 - CA264_04495 0.71 -1.1
1,038,389 + CA264_04495 0.72 -0.1
1,038,390 - CA264_04495 0.72 -0.8
1,038,390 - CA264_04495 0.72 -0.8
1,038,411 + CA264_04495 0.74 -0.1
1,038,412 - CA264_04495 0.74 -1.1
1,038,412 - CA264_04495 0.74 +0.5
1,038,412 - CA264_04495 0.74 -0.5
1,038,413 + CA264_04495 0.74 -0.1
1,038,414 - CA264_04495 0.74 -0.9
1,038,492 - CA264_04495 0.82 +0.0
1,038,532 + CA264_04495 0.86 -0.1
1,038,543 + CA264_04495 0.87 +0.0

Or see this region's nucleotide sequence