Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0639 and Atu0640 are separated by 97 nucleotides Atu0640 and Atu0641 are separated by 193 nucleotides Atu0641 and Atu0642 are separated by 74 nucleotides
Atu0639: Atu0639 - glycyl-tRNA synthetase, alpha subunit, at 626,233 to 627,165
Atu0639
Atu0640: Atu0640 - hypothetical protein, at 627,263 to 627,580
Atu0640
Atu0641: Atu0641 - hypothetical protein, at 627,774 to 628,325
Atu0641
Atu0642: Atu0642 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 628,400 to 629,677
Atu0642
Position (kb) 627
628
629 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 627.287 kb on + strand at 627.305 kb on + strand, within Atu0640 at 627.326 kb on - strand, within Atu0640 at 627.331 kb on - strand, within Atu0640 at 627.576 kb on + strand at 627.623 kb on - strand at 627.675 kb on - strand at 627.681 kb on - strand at 627.712 kb on + strand at 627.720 kb on - strand at 627.854 kb on + strand, within Atu0641 at 628.351 kb on + strand at 628.361 kb on + strand at 628.361 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 627,287 + +0.5 627,305 + Atu0640 0.13 +0.0 627,326 - Atu0640 0.20 +0.4 627,331 - Atu0640 0.21 -0.4 627,576 + -0.3 627,623 - -0.2 627,675 - -0.3 627,681 - -0.6 627,712 + -0.5 627,720 - -0.1 627,854 + Atu0641 0.14 -3.9 628,351 + +0.1 628,361 + -0.9 628,361 + +0.2
Or see this region's nucleotide sequence