Experiment: 30_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23855 and AMB_RS02110 are separated by 262 nucleotides
AMB_RS23855: AMB_RS23855 - PDZ domain-containing protein, at 440,944 to 443,247
_RS23855
AMB_RS02110: AMB_RS02110 - IS701 family transposase ISMmg4, at 443,510 to 444,817
_RS02110
Position (kb) 440
441
442
443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 440.024 kb on - strand at 440.094 kb on + strand at 440.095 kb on - strand at 440.095 kb on - strand at 440.123 kb on + strand at 440.171 kb on - strand at 440.318 kb on + strand at 440.318 kb on + strand at 440.319 kb on - strand at 440.319 kb on - strand at 440.319 kb on - strand at 440.319 kb on - strand at 440.319 kb on - strand at 440.319 kb on - strand at 440.319 kb on - strand at 440.320 kb on + strand at 440.320 kb on + strand at 440.320 kb on + strand at 440.320 kb on + strand at 440.320 kb on + strand at 440.320 kb on + strand at 440.320 kb on + strand at 440.320 kb on + strand at 440.320 kb on + strand at 440.321 kb on - strand at 440.321 kb on - strand at 440.324 kb on + strand at 440.324 kb on + strand at 440.324 kb on + strand at 440.328 kb on + strand at 440.393 kb on + strand at 440.393 kb on + strand at 440.393 kb on + strand at 440.393 kb on + strand at 440.394 kb on - strand at 440.394 kb on - strand at 440.403 kb on - strand at 440.444 kb on + strand at 440.445 kb on - strand at 440.453 kb on + strand at 440.458 kb on + strand at 440.458 kb on + strand at 440.459 kb on - strand at 440.459 kb on - strand at 440.477 kb on + strand at 440.477 kb on + strand at 440.477 kb on + strand at 440.477 kb on + strand at 440.478 kb on - strand at 440.478 kb on - strand at 440.531 kb on + strand at 440.531 kb on + strand at 440.532 kb on - strand at 440.532 kb on - strand at 440.534 kb on + strand at 440.534 kb on + strand at 440.534 kb on + strand at 440.535 kb on - strand at 440.569 kb on + strand at 440.569 kb on + strand at 440.569 kb on + strand at 440.600 kb on - strand at 440.600 kb on - strand at 440.600 kb on - strand at 440.603 kb on + strand at 440.633 kb on + strand at 440.662 kb on + strand at 440.662 kb on + strand at 440.663 kb on - strand at 440.753 kb on + strand at 440.753 kb on + strand at 440.753 kb on + strand at 440.753 kb on + strand at 440.754 kb on - strand at 440.754 kb on - strand at 440.754 kb on - strand at 440.754 kb on - strand at 440.754 kb on - strand at 440.803 kb on + strand at 440.803 kb on + strand at 440.804 kb on - strand at 440.866 kb on + strand at 440.867 kb on - strand at 440.974 kb on - strand at 441.094 kb on + strand at 441.095 kb on - strand at 441.201 kb on + strand, within AMB_RS23855 at 441.201 kb on + strand, within AMB_RS23855 at 441.202 kb on - strand, within AMB_RS23855 at 441.202 kb on - strand, within AMB_RS23855 at 441.289 kb on + strand, within AMB_RS23855 at 441.289 kb on + strand, within AMB_RS23855 at 441.289 kb on + strand, within AMB_RS23855 at 441.290 kb on - strand, within AMB_RS23855 at 441.294 kb on + strand, within AMB_RS23855 at 441.294 kb on + strand, within AMB_RS23855 at 441.391 kb on + strand, within AMB_RS23855 at 441.391 kb on + strand, within AMB_RS23855 at 441.392 kb on - strand, within AMB_RS23855 at 441.442 kb on + strand, within AMB_RS23855 at 441.525 kb on + strand, within AMB_RS23855 at 441.525 kb on + strand, within AMB_RS23855 at 441.526 kb on - strand, within AMB_RS23855 at 441.526 kb on - strand, within AMB_RS23855 at 441.526 kb on - strand, within AMB_RS23855 at 441.526 kb on - strand, within AMB_RS23855 at 441.546 kb on + strand, within AMB_RS23855 at 441.573 kb on + strand, within AMB_RS23855 at 441.573 kb on + strand, within AMB_RS23855 at 441.609 kb on + strand, within AMB_RS23855 at 441.609 kb on + strand, within AMB_RS23855 at 441.609 kb on + strand, within AMB_RS23855 at 441.609 kb on + strand, within AMB_RS23855 at 441.610 kb on - strand, within AMB_RS23855 at 441.610 kb on - strand, within AMB_RS23855 at 441.610 kb on - strand, within AMB_RS23855 at 441.628 kb on - strand, within AMB_RS23855 at 441.628 kb on - strand, within AMB_RS23855 at 441.628 kb on - strand, within AMB_RS23855 at 441.638 kb on + strand, within AMB_RS23855 at 441.688 kb on + strand, within AMB_RS23855 at 441.688 kb on + strand, within AMB_RS23855 at 441.689 kb on - strand, within AMB_RS23855 at 441.689 kb on - strand, within AMB_RS23855 at 441.689 kb on - strand, within AMB_RS23855 at 441.716 kb on + strand, within AMB_RS23855 at 441.717 kb on - strand, within AMB_RS23855 at 441.757 kb on + strand, within AMB_RS23855 at 441.758 kb on - strand, within AMB_RS23855 at 441.768 kb on + strand, within AMB_RS23855 at 441.768 kb on + strand, within AMB_RS23855 at 442.015 kb on + strand, within AMB_RS23855 at 442.015 kb on + strand, within AMB_RS23855 at 442.016 kb on - strand, within AMB_RS23855 at 442.016 kb on - strand, within AMB_RS23855 at 442.016 kb on - strand, within AMB_RS23855 at 442.016 kb on - strand, within AMB_RS23855 at 442.016 kb on - strand, within AMB_RS23855 at 442.016 kb on - strand, within AMB_RS23855 at 442.016 kb on - strand, within AMB_RS23855 at 442.022 kb on - strand, within AMB_RS23855 at 442.035 kb on + strand, within AMB_RS23855 at 442.080 kb on + strand, within AMB_RS23855 at 442.080 kb on + strand, within AMB_RS23855 at 442.081 kb on - strand, within AMB_RS23855 at 442.081 kb on - strand, within AMB_RS23855 at 442.110 kb on + strand, within AMB_RS23855 at 442.111 kb on - strand, within AMB_RS23855 at 442.210 kb on + strand, within AMB_RS23855 at 442.210 kb on + strand, within AMB_RS23855 at 442.211 kb on - strand, within AMB_RS23855 at 442.211 kb on - strand, within AMB_RS23855 at 442.278 kb on + strand, within AMB_RS23855 at 442.467 kb on + strand, within AMB_RS23855 at 442.623 kb on + strand, within AMB_RS23855 at 442.623 kb on + strand, within AMB_RS23855 at 442.623 kb on + strand, within AMB_RS23855 at 442.623 kb on + strand, within AMB_RS23855 at 442.623 kb on + strand, within AMB_RS23855 at 442.623 kb on + strand, within AMB_RS23855 at 442.623 kb on + strand, within AMB_RS23855 at 442.623 kb on + strand, within AMB_RS23855 at 442.623 kb on + strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.624 kb on - strand, within AMB_RS23855 at 442.627 kb on + strand, within AMB_RS23855 at 442.627 kb on + strand, within AMB_RS23855 at 442.628 kb on - strand, within AMB_RS23855 at 442.628 kb on - strand, within AMB_RS23855 at 442.646 kb on - strand, within AMB_RS23855 at 442.757 kb on - strand, within AMB_RS23855 at 442.858 kb on - strand, within AMB_RS23855 at 442.858 kb on - strand, within AMB_RS23855 at 442.879 kb on + strand, within AMB_RS23855 at 442.879 kb on + strand, within AMB_RS23855 at 442.879 kb on + strand, within AMB_RS23855 at 442.880 kb on - strand, within AMB_RS23855 at 442.880 kb on - strand, within AMB_RS23855 at 442.998 kb on + strand, within AMB_RS23855 at 442.999 kb on - strand, within AMB_RS23855 at 442.999 kb on - strand, within AMB_RS23855 at 443.004 kb on + strand, within AMB_RS23855 at 443.004 kb on + strand, within AMB_RS23855 at 443.004 kb on + strand, within AMB_RS23855 at 443.005 kb on - strand, within AMB_RS23855 at 443.017 kb on - strand at 443.020 kb on + strand at 443.020 kb on + strand at 443.021 kb on - strand at 443.058 kb on + strand at 443.058 kb on + strand at 443.058 kb on + strand at 443.062 kb on + strand at 443.063 kb on - strand at 443.063 kb on - strand at 443.136 kb on + strand at 443.137 kb on - strand at 443.137 kb on - strand at 443.161 kb on + strand at 443.162 kb on - strand at 443.199 kb on - strand at 443.357 kb on - strand at 443.381 kb on - strand at 443.454 kb on - strand at 443.471 kb on + strand at 443.471 kb on + strand at 443.558 kb on + strand at 443.558 kb on + strand at 443.558 kb on + strand at 443.558 kb on + strand at 443.558 kb on + strand at 443.559 kb on - strand at 443.559 kb on - strand at 443.559 kb on - strand at 443.618 kb on + strand at 443.618 kb on + strand at 443.618 kb on + strand at 443.619 kb on - strand at 443.619 kb on - strand at 443.619 kb on - strand at 443.872 kb on - strand, within AMB_RS02110 at 443.872 kb on - strand, within AMB_RS02110 at 443.882 kb on + strand, within AMB_RS02110 at 443.882 kb on + strand, within AMB_RS02110 at 443.882 kb on + strand, within AMB_RS02110 at 443.882 kb on + strand, within AMB_RS02110 at 443.883 kb on - strand, within AMB_RS02110 at 443.978 kb on + strand, within AMB_RS02110 at 443.978 kb on + strand, within AMB_RS02110 at 443.978 kb on + strand, within AMB_RS02110 at 443.979 kb on - strand, within AMB_RS02110 at 443.979 kb on - strand, within AMB_RS02110 at 444.188 kb on + strand, within AMB_RS02110 at 444.188 kb on + strand, within AMB_RS02110 at 444.188 kb on + strand, within AMB_RS02110 at 444.188 kb on + strand, within AMB_RS02110 at 444.189 kb on - strand, within AMB_RS02110 at 444.189 kb on - strand, within AMB_RS02110 at 444.189 kb on - strand, within AMB_RS02110 at 444.189 kb on - strand, within AMB_RS02110 at 444.219 kb on + strand, within AMB_RS02110
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_1 remove 440,024 - -0.7 440,094 + +0.6 440,095 - -0.4 440,095 - -0.8 440,123 + -0.9 440,171 - -1.2 440,318 + -1.2 440,318 + -0.6 440,319 - -0.6 440,319 - +0.2 440,319 - -1.3 440,319 - -0.8 440,319 - +0.4 440,319 - -0.8 440,319 - -1.0 440,320 + -0.8 440,320 + -0.4 440,320 + -1.0 440,320 + -0.4 440,320 + -1.9 440,320 + -0.8 440,320 + +0.6 440,320 + -0.5 440,320 + -0.2 440,321 - -1.3 440,321 - -0.3 440,324 + -2.8 440,324 + +0.1 440,324 + +0.7 440,328 + -1.2 440,393 + -0.4 440,393 + -0.9 440,393 + -0.4 440,393 + +0.2 440,394 - -1.3 440,394 - -1.2 440,403 - -1.7 440,444 + -1.1 440,445 - -0.5 440,453 + -1.2 440,458 + +0.7 440,458 + +0.1 440,459 - +0.1 440,459 - -2.4 440,477 + -0.6 440,477 + -1.7 440,477 + -0.6 440,477 + -1.5 440,478 - +0.2 440,478 - +1.6 440,531 + -1.2 440,531 + -0.6 440,532 - +1.1 440,532 - +0.4 440,534 + -0.5 440,534 + -0.5 440,534 + -1.5 440,535 - -0.8 440,569 + -1.2 440,569 + -1.8 440,569 + -0.8 440,600 - -0.3 440,600 - -0.7 440,600 - -1.3 440,603 + -0.4 440,633 + +0.1 440,662 + -0.4 440,662 + -0.1 440,663 - -1.5 440,753 + -0.3 440,753 + +0.1 440,753 + -1.5 440,753 + -1.1 440,754 - -1.4 440,754 - +0.4 440,754 - +0.1 440,754 - -0.9 440,754 - -2.4 440,803 + -1.6 440,803 + -0.8 440,804 - -0.1 440,866 + +0.6 440,867 - +1.4 440,974 - -1.0 441,094 + -0.8 441,095 - +0.2 441,201 + AMB_RS23855 0.11 -1.5 441,201 + AMB_RS23855 0.11 +0.7 441,202 - AMB_RS23855 0.11 -0.6 441,202 - AMB_RS23855 0.11 -0.2 441,289 + AMB_RS23855 0.15 -0.7 441,289 + AMB_RS23855 0.15 -1.3 441,289 + AMB_RS23855 0.15 -0.1 441,290 - AMB_RS23855 0.15 -0.3 441,294 + AMB_RS23855 0.15 -1.6 441,294 + AMB_RS23855 0.15 -0.7 441,391 + AMB_RS23855 0.19 -0.2 441,391 + AMB_RS23855 0.19 +0.1 441,392 - AMB_RS23855 0.19 -0.8 441,442 + AMB_RS23855 0.22 -0.1 441,525 + AMB_RS23855 0.25 -1.8 441,525 + AMB_RS23855 0.25 -0.6 441,526 - AMB_RS23855 0.25 +1.2 441,526 - AMB_RS23855 0.25 +0.4 441,526 - AMB_RS23855 0.25 -0.3 441,526 - AMB_RS23855 0.25 -0.5 441,546 + AMB_RS23855 0.26 +0.3 441,573 + AMB_RS23855 0.27 -3.0 441,573 + AMB_RS23855 0.27 -0.1 441,609 + AMB_RS23855 0.29 -0.3 441,609 + AMB_RS23855 0.29 -0.0 441,609 + AMB_RS23855 0.29 -0.1 441,609 + AMB_RS23855 0.29 +0.9 441,610 - AMB_RS23855 0.29 -0.2 441,610 - AMB_RS23855 0.29 +0.5 441,610 - AMB_RS23855 0.29 -0.2 441,628 - AMB_RS23855 0.30 -1.1 441,628 - AMB_RS23855 0.30 -0.2 441,628 - AMB_RS23855 0.30 -0.4 441,638 + AMB_RS23855 0.30 +2.7 441,688 + AMB_RS23855 0.32 -0.6 441,688 + AMB_RS23855 0.32 -0.5 441,689 - AMB_RS23855 0.32 -0.1 441,689 - AMB_RS23855 0.32 -0.6 441,689 - AMB_RS23855 0.32 -1.5 441,716 + AMB_RS23855 0.34 -0.3 441,717 - AMB_RS23855 0.34 -0.3 441,757 + AMB_RS23855 0.35 -0.2 441,758 - AMB_RS23855 0.35 +0.0 441,768 + AMB_RS23855 0.36 -1.4 441,768 + AMB_RS23855 0.36 -0.3 442,015 + AMB_RS23855 0.46 -0.4 442,015 + AMB_RS23855 0.46 -0.3 442,016 - AMB_RS23855 0.47 +0.7 442,016 - AMB_RS23855 0.47 -1.9 442,016 - AMB_RS23855 0.47 -0.5 442,016 - AMB_RS23855 0.47 -1.2 442,016 - AMB_RS23855 0.47 +0.4 442,016 - AMB_RS23855 0.47 -0.9 442,016 - AMB_RS23855 0.47 -0.3 442,022 - AMB_RS23855 0.47 -0.2 442,035 + AMB_RS23855 0.47 -0.4 442,080 + AMB_RS23855 0.49 -0.6 442,080 + AMB_RS23855 0.49 -0.8 442,081 - AMB_RS23855 0.49 +0.0 442,081 - AMB_RS23855 0.49 -0.0 442,110 + AMB_RS23855 0.51 -0.4 442,111 - AMB_RS23855 0.51 -0.8 442,210 + AMB_RS23855 0.55 -0.8 442,210 + AMB_RS23855 0.55 +0.2 442,211 - AMB_RS23855 0.55 +1.3 442,211 - AMB_RS23855 0.55 +0.4 442,278 + AMB_RS23855 0.58 -1.6 442,467 + AMB_RS23855 0.66 -0.8 442,623 + AMB_RS23855 0.73 -1.3 442,623 + AMB_RS23855 0.73 -1.6 442,623 + AMB_RS23855 0.73 -1.5 442,623 + AMB_RS23855 0.73 -1.3 442,623 + AMB_RS23855 0.73 +0.0 442,623 + AMB_RS23855 0.73 -0.1 442,623 + AMB_RS23855 0.73 -0.6 442,623 + AMB_RS23855 0.73 -0.4 442,623 + AMB_RS23855 0.73 -0.3 442,624 - AMB_RS23855 0.73 +0.0 442,624 - AMB_RS23855 0.73 -0.5 442,624 - AMB_RS23855 0.73 +1.6 442,624 - AMB_RS23855 0.73 -0.1 442,624 - AMB_RS23855 0.73 -0.6 442,624 - AMB_RS23855 0.73 -0.4 442,624 - AMB_RS23855 0.73 -1.9 442,624 - AMB_RS23855 0.73 +0.4 442,624 - AMB_RS23855 0.73 -1.2 442,624 - AMB_RS23855 0.73 +0.3 442,624 - AMB_RS23855 0.73 -1.0 442,624 - AMB_RS23855 0.73 -0.3 442,624 - AMB_RS23855 0.73 -0.9 442,627 + AMB_RS23855 0.73 -0.4 442,627 + AMB_RS23855 0.73 +0.3 442,628 - AMB_RS23855 0.73 -2.0 442,628 - AMB_RS23855 0.73 +0.3 442,646 - AMB_RS23855 0.74 +0.6 442,757 - AMB_RS23855 0.79 -0.5 442,858 - AMB_RS23855 0.83 -0.3 442,858 - AMB_RS23855 0.83 -1.2 442,879 + AMB_RS23855 0.84 -0.4 442,879 + AMB_RS23855 0.84 -0.6 442,879 + AMB_RS23855 0.84 -1.4 442,880 - AMB_RS23855 0.84 +0.9 442,880 - AMB_RS23855 0.84 -0.3 442,998 + AMB_RS23855 0.89 -1.0 442,999 - AMB_RS23855 0.89 +1.3 442,999 - AMB_RS23855 0.89 -0.4 443,004 + AMB_RS23855 0.89 -0.7 443,004 + AMB_RS23855 0.89 -1.1 443,004 + AMB_RS23855 0.89 -0.8 443,005 - AMB_RS23855 0.89 -0.4 443,017 - -1.0 443,020 + -0.3 443,020 + +0.2 443,021 - -0.4 443,058 + -0.3 443,058 + -0.3 443,058 + -1.5 443,062 + -0.6 443,063 - -0.3 443,063 - -0.3 443,136 + -1.2 443,137 - -0.2 443,137 - -0.6 443,161 + +0.7 443,162 - +1.4 443,199 - -0.5 443,357 - -0.2 443,381 - -2.1 443,454 - -0.1 443,471 + -0.9 443,471 + -1.3 443,558 + -0.5 443,558 + -0.4 443,558 + -0.8 443,558 + -0.6 443,558 + -0.5 443,559 - -0.1 443,559 - +0.1 443,559 - +2.5 443,618 + +0.7 443,618 + +2.0 443,618 + -0.1 443,619 - -0.7 443,619 - +0.1 443,619 - -1.5 443,872 - AMB_RS02110 0.28 -0.2 443,872 - AMB_RS02110 0.28 +0.3 443,882 + AMB_RS02110 0.28 -0.4 443,882 + AMB_RS02110 0.28 +1.6 443,882 + AMB_RS02110 0.28 -1.2 443,882 + AMB_RS02110 0.28 +0.9 443,883 - AMB_RS02110 0.29 +0.3 443,978 + AMB_RS02110 0.36 -0.2 443,978 + AMB_RS02110 0.36 +0.0 443,978 + AMB_RS02110 0.36 -0.1 443,979 - AMB_RS02110 0.36 -0.4 443,979 - AMB_RS02110 0.36 +0.7 444,188 + AMB_RS02110 0.52 +0.0 444,188 + AMB_RS02110 0.52 +1.0 444,188 + AMB_RS02110 0.52 -0.2 444,188 + AMB_RS02110 0.52 -0.1 444,189 - AMB_RS02110 0.52 +0.6 444,189 - AMB_RS02110 0.52 -0.5 444,189 - AMB_RS02110 0.52 +2.1 444,189 - AMB_RS02110 0.52 -0.1 444,219 + AMB_RS02110 0.54 -0.2
Or see this region's nucleotide sequence