Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23795

Experiment: 30_nonmag_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS19550 and AMB_RS23795 are separated by 136 nucleotidesAMB_RS23795 and AMB_RS19560 overlap by 4 nucleotides AMB_RS19550: AMB_RS19550 - DUF58 domain-containing protein, at 4,268,664 to 4,269,554 _RS19550 AMB_RS23795: AMB_RS23795 - hypothetical protein, at 4,269,691 to 4,272,383 _RS23795 AMB_RS19560: AMB_RS19560 - membrane protein, at 4,272,380 to 4,274,434 _RS19560 Position (kb) 4269 4270 4271 4272 4273Strain fitness (log2 ratio) -2 -1 0 1 2at 4268.910 kb on + strand, within AMB_RS19550at 4268.910 kb on + strand, within AMB_RS19550at 4268.911 kb on - strand, within AMB_RS19550at 4268.911 kb on - strand, within AMB_RS19550at 4269.330 kb on + strand, within AMB_RS19550at 4269.411 kb on + strand, within AMB_RS19550at 4269.411 kb on + strand, within AMB_RS19550at 4270.696 kb on + strand, within AMB_RS23795at 4270.696 kb on + strand, within AMB_RS23795at 4270.697 kb on - strand, within AMB_RS23795at 4270.699 kb on + strand, within AMB_RS23795at 4270.699 kb on + strand, within AMB_RS23795at 4270.700 kb on - strand, within AMB_RS23795at 4270.700 kb on - strand, within AMB_RS23795at 4270.700 kb on - strand, within AMB_RS23795at 4270.700 kb on - strand, within AMB_RS23795at 4270.781 kb on - strand, within AMB_RS23795at 4270.781 kb on - strand, within AMB_RS23795at 4270.781 kb on - strand, within AMB_RS23795at 4270.781 kb on - strand, within AMB_RS23795at 4270.781 kb on - strand, within AMB_RS23795at 4270.781 kb on - strand, within AMB_RS23795at 4271.155 kb on - strand, within AMB_RS23795at 4271.409 kb on + strand, within AMB_RS23795at 4271.410 kb on - strand, within AMB_RS23795at 4271.410 kb on - strand, within AMB_RS23795at 4271.410 kb on - strand, within AMB_RS23795at 4271.410 kb on - strand, within AMB_RS23795at 4271.863 kb on - strand, within AMB_RS23795at 4271.925 kb on + strand, within AMB_RS23795at 4271.925 kb on + strand, within AMB_RS23795at 4271.926 kb on - strand, within AMB_RS23795at 4271.926 kb on - strand, within AMB_RS23795at 4272.090 kb on + strand, within AMB_RS23795at 4272.091 kb on - strand, within AMB_RS23795at 4272.091 kb on - strand, within AMB_RS23795at 4272.286 kb on - strandat 4272.312 kb on + strandat 4272.312 kb on + strandat 4272.312 kb on + strandat 4272.312 kb on + strandat 4272.313 kb on - strandat 4272.330 kb on + strandat 4272.331 kb on - strandat 4272.331 kb on - strandat 4272.331 kb on - strandat 4272.331 kb on - strandat 4272.598 kb on - strand, within AMB_RS19560

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_1
remove
4,268,910 + AMB_RS19550 0.28 +0.4
4,268,910 + AMB_RS19550 0.28 -0.4
4,268,911 - AMB_RS19550 0.28 +0.6
4,268,911 - AMB_RS19550 0.28 -0.3
4,269,330 + AMB_RS19550 0.75 -0.0
4,269,411 + AMB_RS19550 0.84 +0.4
4,269,411 + AMB_RS19550 0.84 +0.8
4,270,696 + AMB_RS23795 0.37 +0.1
4,270,696 + AMB_RS23795 0.37 -0.2
4,270,697 - AMB_RS23795 0.37 -1.0
4,270,699 + AMB_RS23795 0.37 +0.0
4,270,699 + AMB_RS23795 0.37 +0.7
4,270,700 - AMB_RS23795 0.37 -0.3
4,270,700 - AMB_RS23795 0.37 +0.1
4,270,700 - AMB_RS23795 0.37 -0.4
4,270,700 - AMB_RS23795 0.37 -1.9
4,270,781 - AMB_RS23795 0.40 -1.3
4,270,781 - AMB_RS23795 0.40 -0.1
4,270,781 - AMB_RS23795 0.40 +0.4
4,270,781 - AMB_RS23795 0.40 -0.3
4,270,781 - AMB_RS23795 0.40 +0.3
4,270,781 - AMB_RS23795 0.40 +0.7
4,271,155 - AMB_RS23795 0.54 +0.3
4,271,409 + AMB_RS23795 0.64 -1.3
4,271,410 - AMB_RS23795 0.64 -2.1
4,271,410 - AMB_RS23795 0.64 +1.7
4,271,410 - AMB_RS23795 0.64 +0.5
4,271,410 - AMB_RS23795 0.64 -0.2
4,271,863 - AMB_RS23795 0.81 +0.4
4,271,925 + AMB_RS23795 0.83 -0.8
4,271,925 + AMB_RS23795 0.83 -0.7
4,271,926 - AMB_RS23795 0.83 +2.4
4,271,926 - AMB_RS23795 0.83 +0.6
4,272,090 + AMB_RS23795 0.89 +0.4
4,272,091 - AMB_RS23795 0.89 -0.6
4,272,091 - AMB_RS23795 0.89 +2.0
4,272,286 - +0.2
4,272,312 + +0.5
4,272,312 + +0.6
4,272,312 + -1.7
4,272,312 + -0.4
4,272,313 - -0.8
4,272,330 + -0.2
4,272,331 - -1.3
4,272,331 - -0.0
4,272,331 - -0.3
4,272,331 - -0.1
4,272,598 - AMB_RS19560 0.11 -0.7

Or see this region's nucleotide sequence