Experiment: 30_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22775 and AMB_RS22780 overlap by 46 nucleotides AMB_RS22780 and AMB_RS22785 overlap by 4 nucleotides AMB_RS22785 and AMB_RS22790 are separated by 101 nucleotides AMB_RS22790 and AMB_RS22795 overlap by 1 nucleotides
AMB_RS22775: AMB_RS22775 - penicillin-binding protein activator, at 4,915,638 to 4,917,008
_RS22775
AMB_RS22780: AMB_RS22780 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 4,916,963 to 4,917,937
_RS22780
AMB_RS22785: AMB_RS22785 - YraN family protein, at 4,917,934 to 4,918,323
_RS22785
AMB_RS22790: AMB_RS22790 - BON domain-containing protein, at 4,918,425 to 4,918,988
_RS22790
AMB_RS22795: AMB_RS22795 - hypothetical protein, at 4,918,988 to 4,919,836
_RS22795
Position (kb) 4917
4918
4919 Strain fitness (log2 ratio) -1
0
1 at 4917.398 kb on - strand, within AMB_RS22780 at 4917.398 kb on - strand, within AMB_RS22780 at 4918.321 kb on + strand at 4918.321 kb on + strand at 4919.132 kb on + strand, within AMB_RS22795 at 4919.222 kb on + strand, within AMB_RS22795 at 4919.222 kb on + strand, within AMB_RS22795
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_1 remove 4,917,398 - AMB_RS22780 0.45 +0.2 4,917,398 - AMB_RS22780 0.45 +0.4 4,918,321 + +0.0 4,918,321 + -1.6 4,919,132 + AMB_RS22795 0.17 -0.1 4,919,222 + AMB_RS22795 0.28 -1.1 4,919,222 + AMB_RS22795 0.28 -0.0
Or see this region's nucleotide sequence