Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22395

Experiment: 30_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22390 and AMB_RS22395 overlap by 1 nucleotidesAMB_RS22395 and AMB_RS22400 are separated by 252 nucleotidesAMB_RS22400 and AMB_RS22405 are separated by 8 nucleotides AMB_RS22390: AMB_RS22390 - cobalamin biosynthesis protein CobW, at 4,832,080 to 4,833,087 _RS22390 AMB_RS22395: AMB_RS22395 - cobaltochelatase subunit CobN, at 4,833,087 to 4,836,791 _RS22395 AMB_RS22400: AMB_RS22400 - transposase, at 4,837,044 to 4,837,337 _RS22400 AMB_RS22405: AMB_RS22405 - IS3 family transposase, at 4,837,346 to 4,838,191 _RS22405 Position (kb) 4833 4834 4835 4836 4837Strain fitness (log2 ratio) -1 0 1at 4836.907 kb on + strandat 4836.907 kb on + strandat 4836.907 kb on + strandat 4836.908 kb on - strandat 4836.939 kb on - strandat 4836.939 kb on - strandat 4836.970 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_1
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4,836,907 + -0.2
4,836,907 + +0.6
4,836,907 + +0.4
4,836,908 - -0.3
4,836,939 - -0.5
4,836,939 - -0.0
4,836,970 - +1.2

Or see this region's nucleotide sequence