Experiment: 30_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22165 and AMB_RS22170 are separated by 83 nucleotides AMB_RS22170 and AMB_RS22175 are separated by 3 nucleotides AMB_RS22175 and AMB_RS22180 are separated by 240 nucleotides AMB_RS22180 and AMB_RS22185 are separated by 35 nucleotides
AMB_RS22165: AMB_RS22165 - phenylalanine--tRNA ligase subunit alpha, at 4,784,626 to 4,785,701
_RS22165
AMB_RS22170: AMB_RS22170 - 50S ribosomal protein L20, at 4,785,785 to 4,786,141
_RS22170
AMB_RS22175: AMB_RS22175 - 50S ribosomal protein L35, at 4,786,145 to 4,786,348
_RS22175
AMB_RS22180: AMB_RS22180 - EamA/RhaT family transporter, at 4,786,589 to 4,787,443
_RS22180
AMB_RS22185: AMB_RS22185 - ABC transporter ATP-binding protein, at 4,787,479 to 4,789,080
_RS22185
Position (kb) 4786
4787
4788 Strain fitness (log2 ratio) -1
0
1 at 4786.436 kb on - strand at 4786.770 kb on + strand, within AMB_RS22180 at 4786.905 kb on + strand, within AMB_RS22180 at 4786.906 kb on - strand, within AMB_RS22180 at 4786.906 kb on - strand, within AMB_RS22180 at 4787.163 kb on + strand, within AMB_RS22180 at 4787.163 kb on + strand, within AMB_RS22180 at 4787.212 kb on - strand, within AMB_RS22180 at 4787.212 kb on - strand, within AMB_RS22180 at 4787.212 kb on - strand, within AMB_RS22180
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_1 remove 4,786,436 - +0.3 4,786,770 + AMB_RS22180 0.21 -1.1 4,786,905 + AMB_RS22180 0.37 -0.0 4,786,906 - AMB_RS22180 0.37 -1.0 4,786,906 - AMB_RS22180 0.37 -0.2 4,787,163 + AMB_RS22180 0.67 +0.0 4,787,163 + AMB_RS22180 0.67 -0.1 4,787,212 - AMB_RS22180 0.73 -0.4 4,787,212 - AMB_RS22180 0.73 +0.2 4,787,212 - AMB_RS22180 0.73 -0.2
Or see this region's nucleotide sequence