Experiment: 30_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21355 and AMB_RS21360 are separated by 68 nucleotides AMB_RS21360 and AMB_RS21365 are separated by 82 nucleotides AMB_RS21365 and AMB_RS21370 are separated by 303 nucleotides
AMB_RS21355: AMB_RS21355 - GTP cyclohydrolase I FolE, at 4,633,732 to 4,634,391
_RS21355
AMB_RS21360: AMB_RS21360 - Co2+/Mg2+ efflux protein ApaG, at 4,634,460 to 4,634,852
_RS21360
AMB_RS21365: AMB_RS21365 - O-succinylhomoserine sulfhydrylase, at 4,634,935 to 4,636,146
_RS21365
AMB_RS21370: AMB_RS21370 - enoyl-[acyl-carrier-protein] reductase FabI, at 4,636,450 to 4,637,253
_RS21370
Position (kb) 4634
4635
4636
4637 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4634.450 kb on - strand at 4634.462 kb on - strand at 4634.551 kb on + strand, within AMB_RS21360 at 4634.551 kb on + strand, within AMB_RS21360 at 4634.552 kb on - strand, within AMB_RS21360 at 4634.552 kb on - strand, within AMB_RS21360 at 4634.552 kb on - strand, within AMB_RS21360 at 4634.600 kb on + strand, within AMB_RS21360 at 4634.600 kb on + strand, within AMB_RS21360 at 4634.600 kb on + strand, within AMB_RS21360 at 4634.600 kb on + strand, within AMB_RS21360 at 4634.600 kb on + strand, within AMB_RS21360 at 4634.601 kb on - strand, within AMB_RS21360 at 4634.601 kb on - strand, within AMB_RS21360 at 4634.601 kb on - strand, within AMB_RS21360 at 4634.601 kb on - strand, within AMB_RS21360 at 4634.601 kb on - strand, within AMB_RS21360 at 4634.602 kb on + strand, within AMB_RS21360 at 4634.602 kb on + strand, within AMB_RS21360 at 4634.602 kb on + strand, within AMB_RS21360 at 4634.602 kb on + strand, within AMB_RS21360 at 4634.602 kb on + strand, within AMB_RS21360 at 4634.602 kb on + strand, within AMB_RS21360 at 4634.602 kb on + strand, within AMB_RS21360 at 4634.603 kb on - strand, within AMB_RS21360 at 4634.603 kb on - strand, within AMB_RS21360 at 4634.603 kb on - strand, within AMB_RS21360 at 4634.603 kb on - strand, within AMB_RS21360 at 4634.603 kb on - strand, within AMB_RS21360 at 4634.603 kb on - strand, within AMB_RS21360 at 4634.608 kb on + strand, within AMB_RS21360 at 4634.608 kb on + strand, within AMB_RS21360 at 4634.609 kb on - strand, within AMB_RS21360 at 4634.609 kb on - strand, within AMB_RS21360 at 4634.609 kb on - strand, within AMB_RS21360 at 4634.803 kb on + strand, within AMB_RS21360 at 4634.803 kb on + strand, within AMB_RS21360 at 4634.804 kb on - strand, within AMB_RS21360 at 4634.804 kb on - strand, within AMB_RS21360 at 4634.804 kb on - strand, within AMB_RS21360 at 4634.848 kb on + strand at 4634.848 kb on + strand at 4634.848 kb on + strand at 4634.848 kb on + strand at 4634.849 kb on - strand at 4634.849 kb on - strand at 4634.849 kb on - strand at 4634.849 kb on - strand at 4634.889 kb on + strand at 4634.889 kb on + strand at 4634.889 kb on + strand at 4634.889 kb on + strand at 4634.889 kb on + strand at 4634.890 kb on - strand at 4634.890 kb on - strand at 4634.890 kb on - strand at 4634.890 kb on - strand at 4634.890 kb on - strand at 4634.890 kb on - strand at 4634.890 kb on - strand at 4634.936 kb on + strand at 4634.937 kb on - strand at 4634.937 kb on - strand at 4636.233 kb on - strand at 4636.380 kb on - strand at 4636.392 kb on + strand at 4636.392 kb on + strand at 4636.431 kb on + strand at 4636.431 kb on + strand at 4636.431 kb on + strand at 4636.432 kb on - strand at 4636.432 kb on - strand at 4636.553 kb on - strand, within AMB_RS21370 at 4636.604 kb on - strand, within AMB_RS21370 at 4636.627 kb on + strand, within AMB_RS21370 at 4636.627 kb on + strand, within AMB_RS21370 at 4636.628 kb on - strand, within AMB_RS21370 at 4636.666 kb on + strand, within AMB_RS21370 at 4636.666 kb on + strand, within AMB_RS21370 at 4636.666 kb on + strand, within AMB_RS21370 at 4636.666 kb on + strand, within AMB_RS21370 at 4636.666 kb on + strand, within AMB_RS21370 at 4636.667 kb on - strand, within AMB_RS21370 at 4636.667 kb on - strand, within AMB_RS21370 at 4636.769 kb on - strand, within AMB_RS21370 at 4636.769 kb on - strand, within AMB_RS21370 at 4636.924 kb on + strand, within AMB_RS21370 at 4636.951 kb on + strand, within AMB_RS21370 at 4636.951 kb on + strand, within AMB_RS21370 at 4636.951 kb on + strand, within AMB_RS21370 at 4636.952 kb on - strand, within AMB_RS21370 at 4636.952 kb on - strand, within AMB_RS21370 at 4636.999 kb on + strand, within AMB_RS21370 at 4636.999 kb on + strand, within AMB_RS21370 at 4637.000 kb on - strand, within AMB_RS21370 at 4637.000 kb on - strand, within AMB_RS21370 at 4637.000 kb on - strand, within AMB_RS21370
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_1 remove 4,634,450 - +0.0 4,634,462 - -0.6 4,634,551 + AMB_RS21360 0.23 +0.6 4,634,551 + AMB_RS21360 0.23 +0.1 4,634,552 - AMB_RS21360 0.23 +0.4 4,634,552 - AMB_RS21360 0.23 +0.0 4,634,552 - AMB_RS21360 0.23 +0.6 4,634,600 + AMB_RS21360 0.36 -0.3 4,634,600 + AMB_RS21360 0.36 -0.4 4,634,600 + AMB_RS21360 0.36 +0.1 4,634,600 + AMB_RS21360 0.36 +0.1 4,634,600 + AMB_RS21360 0.36 +0.2 4,634,601 - AMB_RS21360 0.36 +0.6 4,634,601 - AMB_RS21360 0.36 -0.6 4,634,601 - AMB_RS21360 0.36 +0.9 4,634,601 - AMB_RS21360 0.36 -0.4 4,634,601 - AMB_RS21360 0.36 +0.0 4,634,602 + AMB_RS21360 0.36 +0.4 4,634,602 + AMB_RS21360 0.36 -2.0 4,634,602 + AMB_RS21360 0.36 -0.5 4,634,602 + AMB_RS21360 0.36 +0.0 4,634,602 + AMB_RS21360 0.36 -0.2 4,634,602 + AMB_RS21360 0.36 -0.5 4,634,602 + AMB_RS21360 0.36 +1.0 4,634,603 - AMB_RS21360 0.36 -0.3 4,634,603 - AMB_RS21360 0.36 -0.0 4,634,603 - AMB_RS21360 0.36 -0.9 4,634,603 - AMB_RS21360 0.36 +0.3 4,634,603 - AMB_RS21360 0.36 +0.0 4,634,603 - AMB_RS21360 0.36 -0.6 4,634,608 + AMB_RS21360 0.38 -0.5 4,634,608 + AMB_RS21360 0.38 -1.8 4,634,609 - AMB_RS21360 0.38 +0.4 4,634,609 - AMB_RS21360 0.38 -0.6 4,634,609 - AMB_RS21360 0.38 -0.0 4,634,803 + AMB_RS21360 0.87 -0.4 4,634,803 + AMB_RS21360 0.87 +0.0 4,634,804 - AMB_RS21360 0.88 -0.1 4,634,804 - AMB_RS21360 0.88 -0.2 4,634,804 - AMB_RS21360 0.88 -0.0 4,634,848 + +0.2 4,634,848 + -2.6 4,634,848 + -0.3 4,634,848 + -0.5 4,634,849 - -0.8 4,634,849 - +0.7 4,634,849 - -0.3 4,634,849 - -0.8 4,634,889 + -0.2 4,634,889 + -0.6 4,634,889 + -0.6 4,634,889 + -0.0 4,634,889 + +0.7 4,634,890 - +0.4 4,634,890 - +0.2 4,634,890 - +0.6 4,634,890 - -0.1 4,634,890 - -0.2 4,634,890 - -0.5 4,634,890 - +0.4 4,634,936 + -2.6 4,634,937 - +1.8 4,634,937 - +0.1 4,636,233 - -0.6 4,636,380 - +0.3 4,636,392 + +0.8 4,636,392 + +2.7 4,636,431 + -0.9 4,636,431 + -0.9 4,636,431 + +0.7 4,636,432 - -1.0 4,636,432 - -0.4 4,636,553 - AMB_RS21370 0.13 -1.0 4,636,604 - AMB_RS21370 0.19 -1.6 4,636,627 + AMB_RS21370 0.22 -2.0 4,636,627 + AMB_RS21370 0.22 +0.2 4,636,628 - AMB_RS21370 0.22 +0.2 4,636,666 + AMB_RS21370 0.27 -1.6 4,636,666 + AMB_RS21370 0.27 +0.2 4,636,666 + AMB_RS21370 0.27 -0.2 4,636,666 + AMB_RS21370 0.27 -0.3 4,636,666 + AMB_RS21370 0.27 +0.9 4,636,667 - AMB_RS21370 0.27 -0.7 4,636,667 - AMB_RS21370 0.27 -0.5 4,636,769 - AMB_RS21370 0.40 -0.6 4,636,769 - AMB_RS21370 0.40 -0.1 4,636,924 + AMB_RS21370 0.59 +3.3 4,636,951 + AMB_RS21370 0.62 +0.7 4,636,951 + AMB_RS21370 0.62 -1.6 4,636,951 + AMB_RS21370 0.62 +0.4 4,636,952 - AMB_RS21370 0.62 -1.3 4,636,952 - AMB_RS21370 0.62 -0.2 4,636,999 + AMB_RS21370 0.68 -1.2 4,636,999 + AMB_RS21370 0.68 -0.2 4,637,000 - AMB_RS21370 0.68 +0.5 4,637,000 - AMB_RS21370 0.68 -0.3 4,637,000 - AMB_RS21370 0.68 -0.1
Or see this region's nucleotide sequence