Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19165

Experiment: 30_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19160 and AMB_RS19165 are separated by 55 nucleotidesAMB_RS19165 and AMB_RS19170 are separated by 243 nucleotides AMB_RS19160: AMB_RS19160 - methyltransferase domain-containing protein, at 4,165,757 to 4,167,079 _RS19160 AMB_RS19165: AMB_RS19165 - hypothetical protein, at 4,167,135 to 4,167,317 _RS19165 AMB_RS19170: AMB_RS19170 - 3-beta hydroxysteroid dehydrogenase, at 4,167,561 to 4,168,631 _RS19170 Position (kb) 4167 4168Strain fitness (log2 ratio) -2 -1 0 1at 4166.864 kb on + strand, within AMB_RS19160at 4166.864 kb on + strand, within AMB_RS19160at 4166.864 kb on + strand, within AMB_RS19160at 4166.865 kb on - strand, within AMB_RS19160at 4166.865 kb on - strand, within AMB_RS19160at 4166.865 kb on - strand, within AMB_RS19160at 4167.077 kb on + strandat 4167.352 kb on + strandat 4167.353 kb on - strandat 4167.353 kb on - strandat 4167.439 kb on + strandat 4167.439 kb on + strandat 4167.440 kb on - strandat 4167.465 kb on - strandat 4167.473 kb on + strandat 4167.474 kb on - strandat 4167.474 kb on - strandat 4167.484 kb on + strandat 4167.501 kb on + strandat 4167.501 kb on + strandat 4167.501 kb on + strandat 4167.501 kb on + strandat 4167.501 kb on + strandat 4167.501 kb on + strandat 4167.502 kb on - strandat 4167.502 kb on - strandat 4167.502 kb on - strandat 4167.502 kb on - strandat 4167.502 kb on - strandat 4167.828 kb on + strand, within AMB_RS19170at 4167.829 kb on - strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.879 kb on - strand, within AMB_RS19170at 4167.891 kb on + strand, within AMB_RS19170at 4167.892 kb on - strand, within AMB_RS19170at 4167.892 kb on - strand, within AMB_RS19170at 4167.942 kb on + strand, within AMB_RS19170at 4168.080 kb on + strand, within AMB_RS19170at 4168.080 kb on + strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.122 kb on + strand, within AMB_RS19170at 4168.122 kb on + strand, within AMB_RS19170at 4168.123 kb on - strand, within AMB_RS19170at 4168.134 kb on + strand, within AMB_RS19170at 4168.134 kb on + strand, within AMB_RS19170at 4168.135 kb on - strand, within AMB_RS19170at 4168.135 kb on - strand, within AMB_RS19170at 4168.135 kb on - strand, within AMB_RS19170at 4168.257 kb on + strand, within AMB_RS19170at 4168.257 kb on + strand, within AMB_RS19170at 4168.258 kb on - strand, within AMB_RS19170at 4168.317 kb on + strand, within AMB_RS19170

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_1
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4,166,864 + AMB_RS19160 0.84 -0.1
4,166,864 + AMB_RS19160 0.84 -0.3
4,166,864 + AMB_RS19160 0.84 -1.2
4,166,865 - AMB_RS19160 0.84 -0.1
4,166,865 - AMB_RS19160 0.84 +0.2
4,166,865 - AMB_RS19160 0.84 -0.9
4,167,077 + -1.8
4,167,352 + -1.7
4,167,353 - +0.5
4,167,353 - -0.9
4,167,439 + -0.8
4,167,439 + -0.7
4,167,440 - -0.6
4,167,465 - -0.4
4,167,473 + -1.0
4,167,474 - -0.3
4,167,474 - -0.4
4,167,484 + -0.1
4,167,501 + -1.9
4,167,501 + +0.8
4,167,501 + -1.2
4,167,501 + -0.1
4,167,501 + -0.1
4,167,501 + -0.1
4,167,502 - -0.5
4,167,502 - -1.6
4,167,502 - +0.3
4,167,502 - -0.3
4,167,502 - -0.7
4,167,828 + AMB_RS19170 0.25 -0.0
4,167,829 - AMB_RS19170 0.25 +0.7
4,167,846 + AMB_RS19170 0.27 -0.6
4,167,846 + AMB_RS19170 0.27 -0.4
4,167,846 + AMB_RS19170 0.27 +0.2
4,167,846 + AMB_RS19170 0.27 +0.2
4,167,846 + AMB_RS19170 0.27 -0.8
4,167,847 - AMB_RS19170 0.27 +0.7
4,167,847 - AMB_RS19170 0.27 -1.4
4,167,847 - AMB_RS19170 0.27 -0.3
4,167,847 - AMB_RS19170 0.27 +0.0
4,167,847 - AMB_RS19170 0.27 -0.8
4,167,847 - AMB_RS19170 0.27 -0.2
4,167,847 - AMB_RS19170 0.27 +0.0
4,167,847 - AMB_RS19170 0.27 +0.1
4,167,879 - AMB_RS19170 0.30 +1.1
4,167,891 + AMB_RS19170 0.31 -0.1
4,167,892 - AMB_RS19170 0.31 -0.2
4,167,892 - AMB_RS19170 0.31 +0.2
4,167,942 + AMB_RS19170 0.36 -0.7
4,168,080 + AMB_RS19170 0.48 +0.8
4,168,080 + AMB_RS19170 0.48 -0.3
4,168,081 - AMB_RS19170 0.49 -0.0
4,168,081 - AMB_RS19170 0.49 -0.2
4,168,081 - AMB_RS19170 0.49 +0.4
4,168,081 - AMB_RS19170 0.49 +0.3
4,168,081 - AMB_RS19170 0.49 -0.6
4,168,081 - AMB_RS19170 0.49 -0.6
4,168,122 + AMB_RS19170 0.52 -1.2
4,168,122 + AMB_RS19170 0.52 -0.1
4,168,123 - AMB_RS19170 0.52 +0.4
4,168,134 + AMB_RS19170 0.54 -0.4
4,168,134 + AMB_RS19170 0.54 -0.0
4,168,135 - AMB_RS19170 0.54 -0.5
4,168,135 - AMB_RS19170 0.54 -0.5
4,168,135 - AMB_RS19170 0.54 -0.5
4,168,257 + AMB_RS19170 0.65 +1.0
4,168,257 + AMB_RS19170 0.65 +0.2
4,168,258 - AMB_RS19170 0.65 -0.1
4,168,317 + AMB_RS19170 0.71 -1.2

Or see this region's nucleotide sequence