Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS18755

Experiment: 30_nonmag_1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_nonmag_1
4,069,559	+		AMB_RS18745	0.45	-0.6
4,069,559	+		AMB_RS18745	0.45	-0.1
4,069,560	-		AMB_RS18745	0.45	-0.4
4,069,560	-		AMB_RS18745	0.45	-0.2
4,069,560	-		AMB_RS18745	0.45	-0.8
4,069,612	+		AMB_RS18745	0.57	+1.1
4,069,612	+		AMB_RS18745	0.57	-1.2
4,069,613	-		AMB_RS18745	0.57	+0.1
4,069,627	+		AMB_RS18745	0.60	-1.1
4,069,627	+		AMB_RS18745	0.60	+0.0
4,069,627	+		AMB_RS18745	0.60	-1.4
4,069,627	+		AMB_RS18745	0.60	-0.2
4,069,627	+		AMB_RS18745	0.60	-3.3
4,069,628	-		AMB_RS18745	0.60	-0.8
4,069,628	-		AMB_RS18745	0.60	-0.4
4,069,628	-		AMB_RS18745	0.60	-1.3
4,069,788	+				+0.4
4,069,789	-				-0.5
4,069,789	-				-0.1
4,069,801	-				-0.4
4,069,801	-				+0.7
4,069,807	+				-0.7
4,069,808	-				+0.4
4,069,808	-				+0.3
4,069,808	-				-0.6
4,069,808	-				+0.2
4,069,905	+		AMB_RS18750	0.15	+0.4
4,069,906	-		AMB_RS18750	0.15	+1.7
4,069,906	-		AMB_RS18750	0.15	-0.1
4,069,906	-		AMB_RS18750	0.15	+0.4
4,069,906	-		AMB_RS18750	0.15	+0.4
4,069,926	+		AMB_RS18750	0.21	+0.1
4,069,926	+		AMB_RS18750	0.21	-0.5
4,069,942	+		AMB_RS18750	0.26	-1.9
4,069,943	-		AMB_RS18750	0.26	+1.4
4,069,943	-		AMB_RS18750	0.26	+0.8
4,069,976	+		AMB_RS18750	0.36	-0.8
4,070,026	-		AMB_RS18750	0.52	+0.0
4,070,056	+		AMB_RS18750	0.61	-1.2
4,070,056	+		AMB_RS18750	0.61	-1.7
4,070,056	+		AMB_RS18750	0.61	-2.4
4,070,057	-		AMB_RS18750	0.61	+1.1
4,070,057	-		AMB_RS18750	0.61	-0.0
4,070,057	-		AMB_RS18750	0.61	-0.7
4,070,089	-		AMB_RS18750	0.71	-1.3
4,070,091	+		AMB_RS18750	0.72	+0.9
4,070,092	-		AMB_RS18750	0.72	+0.3
4,070,092	-		AMB_RS18750	0.72	-1.9
4,070,092	-		AMB_RS18750	0.72	-0.1
4,070,092	-		AMB_RS18750	0.72	-0.6
4,070,105	+		AMB_RS18750	0.76	-1.2
4,070,178	+				-0.2
4,070,186	-				-0.5
4,070,186	-				-0.5
4,070,186	-				+0.0
4,070,214	+				-0.4
4,070,221	+				-0.3
4,070,222	-				-0.5
4,070,288	-				-1.1
4,070,319	+				-0.2
4,070,319	+				-1.2
4,070,319	+				-0.9
4,070,320	-				-1.9
4,070,320	-				-0.1
4,070,320	-				-0.8
4,070,320	-				-0.3
4,070,353	+				-0.6
4,070,353	+				-1.3
4,070,353	+				+0.5
4,070,353	+				+3.0
4,070,353	+				-1.3
4,070,354	-				-1.6
4,070,354	-				+0.4
4,070,354	-				-0.6
4,070,354	-				+0.8
4,070,358	+				-0.9
4,070,358	+				-0.8
4,070,520	+				-0.6
4,070,520	+				-0.4
4,070,689	+		AMB_RS18755	0.14	-0.5
4,070,692	+		AMB_RS18755	0.14	-1.2
4,070,692	+		AMB_RS18755	0.14	-1.2
4,070,706	+		AMB_RS18755	0.15	-1.4
4,070,707	-		AMB_RS18755	0.15	+0.1
4,070,757	+		AMB_RS18755	0.18	-0.5
4,070,758	-		AMB_RS18755	0.18	-0.1
4,070,817	+		AMB_RS18755	0.22	-0.8
4,070,891	+		AMB_RS18755	0.26	-0.6
4,071,056	+		AMB_RS18755	0.37	+0.2
4,071,057	-		AMB_RS18755	0.37	-1.4
4,071,088	+		AMB_RS18755	0.39	-0.4
4,071,089	-		AMB_RS18755	0.39	-1.7
4,071,089	-		AMB_RS18755	0.39	-1.7
4,071,089	-		AMB_RS18755	0.39	-0.0
4,071,145	+		AMB_RS18755	0.42	-0.7
4,071,145	+		AMB_RS18755	0.42	+0.2
4,071,146	-		AMB_RS18755	0.42	-1.0
4,071,152	+		AMB_RS18755	0.43	+0.6
4,071,153	-		AMB_RS18755	0.43	-1.0
4,071,297	-		AMB_RS18755	0.52	-2.2
4,071,329	-		AMB_RS18755	0.54	-0.5
4,071,329	-		AMB_RS18755	0.54	-1.4
4,071,334	+		AMB_RS18755	0.54	-1.6
4,071,334	+		AMB_RS18755	0.54	-0.6
4,071,335	-		AMB_RS18755	0.54	-0.5
4,071,384	+		AMB_RS18755	0.57	-0.6
4,071,419	-		AMB_RS18755	0.60	+0.4
4,071,463	+		AMB_RS18755	0.62	-0.5
4,071,544	-		AMB_RS18755	0.67	-1.8
4,071,689	+		AMB_RS18755	0.77	-1.3
4,071,689	+		AMB_RS18755	0.77	+0.3
4,071,690	-		AMB_RS18755	0.77	-0.2
4,071,708	-		AMB_RS18755	0.78	-1.3
4,071,708	-		AMB_RS18755	0.78	-0.8
4,071,708	-		AMB_RS18755	0.78	-0.3
4,071,822	-		AMB_RS18755	0.85	+0.4
4,071,822	-		AMB_RS18755	0.85	-0.5
4,071,822	-		AMB_RS18755	0.85	-0.9
4,071,822	-		AMB_RS18755	0.85	-0.2
4,071,822	-		AMB_RS18755	0.85	-0.7
4,071,858	-		AMB_RS18755	0.87	-0.2
4,071,932	-				-1.1
4,071,932	-				-0.4
4,071,969	-				-0.1
4,071,990	-				-0.8
4,072,003	+				-0.4
4,072,004	-				-0.5
4,072,004	-				-0.3
4,072,021	-				-0.9
4,072,021	-				-0.6
4,072,029	-				+1.4
4,072,043	+				+0.4
4,072,111	-				-0.4
4,072,368	+		AMB_RS18760	0.42	-0.2
4,072,368	+		AMB_RS18760	0.42	+0.7
4,072,368	+		AMB_RS18760	0.42	+0.1
4,072,368	+		AMB_RS18760	0.42	+0.8
4,072,368	+		AMB_RS18760	0.42	-1.1
4,072,368	+		AMB_RS18760	0.42	-0.2
4,072,369	-		AMB_RS18760	0.43	-0.3
4,072,369	-		AMB_RS18760	0.43	-0.0
4,072,369	-		AMB_RS18760	0.43	+0.1
4,072,369	-		AMB_RS18760	0.43	-1.7
4,072,369	-		AMB_RS18760	0.43	-0.6
4,072,369	-		AMB_RS18760	0.43	+0.3
4,072,548	+				-0.5
4,072,548	+				-1.2
4,072,548	+				-0.2
4,072,548	+				-0.3
4,072,548	+				-0.0
4,072,549	-				-0.3
4,072,549	-				-0.4
4,072,549	-				+0.1
4,072,549	-				+1.4
4,072,625	+				-0.1
4,072,625	+				-0.3
4,072,625	+				-0.1
4,072,745	+		AMB_RS18765	0.12	-0.9
4,072,745	+		AMB_RS18765	0.12	-0.7
4,072,746	-		AMB_RS18765	0.12	+0.0
4,072,772	+		AMB_RS18765	0.14	-0.6
4,072,772	+		AMB_RS18765	0.14	-0.5
4,072,772	+		AMB_RS18765	0.14	-0.1
4,072,772	+		AMB_RS18765	0.14	-0.2
4,072,772	+		AMB_RS18765	0.14	+0.4
4,072,772	+		AMB_RS18765	0.14	+0.4
4,072,773	-		AMB_RS18765	0.14	-0.1
4,072,773	-		AMB_RS18765	0.14	+0.2
4,073,040	+		AMB_RS18765	0.33	-0.5