Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16985

Experiment: 30_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS16975 and AMB_RS16980 are separated by 6 nucleotidesAMB_RS16980 and AMB_RS16985 overlap by 32 nucleotidesAMB_RS16985 and AMB_RS16990 overlap by 4 nucleotidesAMB_RS16990 and AMB_RS16995 overlap by 1 nucleotides AMB_RS16975: AMB_RS16975 - cytochrome c oxidase accessory protein CcoG, at 3,647,120 to 3,648,565 _RS16975 AMB_RS16980: AMB_RS16980 - Crp/Fnr family transcriptional regulator, at 3,648,572 to 3,649,381 _RS16980 AMB_RS16985: AMB_RS16985 - membrane protein, at 3,649,350 to 3,649,766 _RS16985 AMB_RS16990: AMB_RS16990 - transporter component, at 3,649,763 to 3,650,179 _RS16990 AMB_RS16995: AMB_RS16995 - carboxymuconolactone decarboxylase family protein, at 3,650,179 to 3,650,538 _RS16995 Position (kb) 3649 3650Strain fitness (log2 ratio) -2 -1 0 1at 3648.449 kb on + strandat 3648.449 kb on + strandat 3648.449 kb on + strandat 3648.450 kb on - strandat 3648.450 kb on - strandat 3648.450 kb on - strandat 3648.450 kb on - strandat 3648.864 kb on - strand, within AMB_RS16980at 3648.957 kb on + strand, within AMB_RS16980at 3648.958 kb on - strand, within AMB_RS16980at 3649.041 kb on + strand, within AMB_RS16980at 3649.041 kb on + strand, within AMB_RS16980at 3649.041 kb on + strand, within AMB_RS16980at 3649.041 kb on + strand, within AMB_RS16980at 3649.041 kb on + strand, within AMB_RS16980at 3649.041 kb on + strand, within AMB_RS16980at 3649.042 kb on - strand, within AMB_RS16980at 3649.042 kb on - strand, within AMB_RS16980at 3649.042 kb on - strand, within AMB_RS16980at 3649.042 kb on - strand, within AMB_RS16980at 3649.042 kb on - strand, within AMB_RS16980at 3649.042 kb on - strand, within AMB_RS16980at 3649.076 kb on - strand, within AMB_RS16980at 3649.108 kb on - strand, within AMB_RS16980at 3649.108 kb on - strand, within AMB_RS16980at 3649.333 kb on - strandat 3649.333 kb on - strandat 3649.333 kb on - strandat 3650.091 kb on + strand, within AMB_RS16990at 3650.091 kb on + strand, within AMB_RS16990at 3650.092 kb on - strand, within AMB_RS16990at 3650.217 kb on - strand, within AMB_RS16995at 3650.217 kb on - strand, within AMB_RS16995at 3650.240 kb on + strand, within AMB_RS16995at 3650.240 kb on + strand, within AMB_RS16995at 3650.240 kb on + strand, within AMB_RS16995at 3650.241 kb on - strand, within AMB_RS16995at 3650.241 kb on - strand, within AMB_RS16995at 3650.267 kb on + strand, within AMB_RS16995at 3650.268 kb on - strand, within AMB_RS16995at 3650.268 kb on - strand, within AMB_RS16995at 3650.268 kb on - strand, within AMB_RS16995at 3650.268 kb on - strand, within AMB_RS16995at 3650.268 kb on - strand, within AMB_RS16995at 3650.268 kb on - strand, within AMB_RS16995at 3650.268 kb on - strand, within AMB_RS16995at 3650.268 kb on - strand, within AMB_RS16995at 3650.268 kb on - strand, within AMB_RS16995at 3650.766 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_1
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3,648,449 + -0.6
3,648,449 + +0.2
3,648,449 + +0.2
3,648,450 - +0.0
3,648,450 - -0.8
3,648,450 - -1.2
3,648,450 - +0.6
3,648,864 - AMB_RS16980 0.36 -0.6
3,648,957 + AMB_RS16980 0.48 +0.0
3,648,958 - AMB_RS16980 0.48 -0.3
3,649,041 + AMB_RS16980 0.58 -0.3
3,649,041 + AMB_RS16980 0.58 +0.2
3,649,041 + AMB_RS16980 0.58 -0.2
3,649,041 + AMB_RS16980 0.58 -1.3
3,649,041 + AMB_RS16980 0.58 -0.1
3,649,041 + AMB_RS16980 0.58 -0.9
3,649,042 - AMB_RS16980 0.58 +0.3
3,649,042 - AMB_RS16980 0.58 +1.3
3,649,042 - AMB_RS16980 0.58 +0.7
3,649,042 - AMB_RS16980 0.58 +0.1
3,649,042 - AMB_RS16980 0.58 -1.8
3,649,042 - AMB_RS16980 0.58 -0.4
3,649,076 - AMB_RS16980 0.62 -0.3
3,649,108 - AMB_RS16980 0.66 -0.1
3,649,108 - AMB_RS16980 0.66 -0.9
3,649,333 - -0.5
3,649,333 - -0.6
3,649,333 - +0.1
3,650,091 + AMB_RS16990 0.79 +0.3
3,650,091 + AMB_RS16990 0.79 +0.3
3,650,092 - AMB_RS16990 0.79 +0.9
3,650,217 - AMB_RS16995 0.11 +1.5
3,650,217 - AMB_RS16995 0.11 -0.1
3,650,240 + AMB_RS16995 0.17 +0.9
3,650,240 + AMB_RS16995 0.17 -0.5
3,650,240 + AMB_RS16995 0.17 +1.0
3,650,241 - AMB_RS16995 0.17 +0.7
3,650,241 - AMB_RS16995 0.17 +0.2
3,650,267 + AMB_RS16995 0.24 +1.0
3,650,268 - AMB_RS16995 0.25 -1.0
3,650,268 - AMB_RS16995 0.25 +0.3
3,650,268 - AMB_RS16995 0.25 -0.2
3,650,268 - AMB_RS16995 0.25 +0.5
3,650,268 - AMB_RS16995 0.25 +0.7
3,650,268 - AMB_RS16995 0.25 +0.4
3,650,268 - AMB_RS16995 0.25 +0.7
3,650,268 - AMB_RS16995 0.25 -0.2
3,650,268 - AMB_RS16995 0.25 +0.3
3,650,766 + -0.6

Or see this region's nucleotide sequence