Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS15815

Experiment: 30_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23505 and AMB_RS15815 are separated by 73 nucleotidesAMB_RS15815 and AMB_RS15820 are separated by 197 nucleotidesAMB_RS15820 and AMB_RS15825 are separated by 49 nucleotides AMB_RS23505: AMB_RS23505 - DNA-directed RNA polymerase subunit beta', at 3,385,003 to 3,389,493 _RS23505 AMB_RS15815: AMB_RS15815 - DNA-directed RNA polymerase subunit beta, at 3,389,567 to 3,393,742 _RS15815 AMB_RS15820: AMB_RS15820 - 50S ribosomal protein L7/L12, at 3,393,940 to 3,394,314 _RS15820 AMB_RS15825: AMB_RS15825 - 50S ribosomal protein L10, at 3,394,364 to 3,394,879 _RS15825 Position (kb) 3389 3390 3391 3392 3393 3394Strain fitness (log2 ratio) -2 -1 0 1at 3389.569 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_1
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3,389,569 - -2.2

Or see this region's nucleotide sequence