Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS11495

Experiment: 30_nonmag_1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_nonmag_1
2,471,982	+		AMB_RS11485	0.49	-0.6
2,471,982	+		AMB_RS11485	0.49	-0.7
2,472,035	+		AMB_RS11485	0.62	+0.1
2,472,035	+		AMB_RS11485	0.62	+0.2
2,472,035	+		AMB_RS11485	0.62	+0.1
2,472,035	+		AMB_RS11485	0.62	+3.0
2,472,035	+		AMB_RS11485	0.62	-1.1
2,472,035	+		AMB_RS11485	0.62	-0.8
2,472,036	-		AMB_RS11485	0.62	-1.4
2,472,036	-		AMB_RS11485	0.62	-0.6
2,472,036	-		AMB_RS11485	0.62	-0.6
2,472,036	-		AMB_RS11485	0.62	-0.9
2,472,036	-		AMB_RS11485	0.62	-0.1
2,472,036	-		AMB_RS11485	0.62	-0.6
2,472,036	-		AMB_RS11485	0.62	-0.5
2,472,207	+				-0.5
2,472,207	+				-0.5
2,472,208	-				+0.2
2,472,208	-				-0.1
2,472,229	+				-0.9
2,472,229	+				-0.7
2,472,378	+		AMB_RS11490	0.28	+0.3
2,472,378	+		AMB_RS11490	0.28	-0.9
2,472,378	+		AMB_RS11490	0.28	-0.7
2,472,378	+		AMB_RS11490	0.28	+0.3
2,472,378	+		AMB_RS11490	0.28	-0.2
2,472,378	+		AMB_RS11490	0.28	-0.2
2,472,378	+		AMB_RS11490	0.28	-0.6
2,472,379	-		AMB_RS11490	0.29	-0.2
2,472,379	-		AMB_RS11490	0.29	-0.0
2,472,525	+		AMB_RS11490	0.53	-0.5
2,472,525	+		AMB_RS11490	0.53	+0.5
2,472,525	+		AMB_RS11490	0.53	-0.7
2,472,525	+		AMB_RS11490	0.53	+0.1
2,472,673	-		AMB_RS11490	0.77	-0.4
2,472,673	-		AMB_RS11490	0.77	-0.2
2,472,673	-		AMB_RS11490	0.77	-1.1
2,472,677	+		AMB_RS11490	0.78	-1.1
2,472,677	+		AMB_RS11490	0.78	+0.1
2,472,677	+		AMB_RS11490	0.78	-0.4
2,472,677	+		AMB_RS11490	0.78	-1.1
2,472,678	-		AMB_RS11490	0.78	+0.1
2,472,682	+		AMB_RS11490	0.79	+0.3
2,472,787	+				-0.7
2,472,787	+				-0.2
2,472,788	-				+0.1
2,472,788	-				-0.2
2,472,846	+				-0.7
2,472,847	-				+0.6
2,472,870	-				-0.3
2,472,874	+				+0.0
2,472,875	-				-0.1
2,472,883	+				-1.5
2,472,883	+				-0.3
2,472,884	-				-0.4
2,472,884	-				-0.6
2,472,884	-				-1.1
2,472,884	-				-0.3
2,472,884	-				+0.6
2,473,050	+		AMB_RS11495	0.14	-0.3
2,473,050	+		AMB_RS11495	0.14	-0.9
2,473,050	+		AMB_RS11495	0.14	-0.0
2,473,050	+		AMB_RS11495	0.14	-0.1
2,473,050	+		AMB_RS11495	0.14	-1.0
2,473,051	-		AMB_RS11495	0.14	-0.1
2,473,051	-		AMB_RS11495	0.14	-1.4
2,473,089	+		AMB_RS11495	0.18	-0.9
2,473,090	-		AMB_RS11495	0.18	-1.7
2,473,245	+		AMB_RS11495	0.35	-0.4
2,473,245	+		AMB_RS11495	0.35	+0.1
2,473,245	+		AMB_RS11495	0.35	+0.9
2,473,245	+		AMB_RS11495	0.35	-1.6
2,473,245	+		AMB_RS11495	0.35	-0.4
2,473,245	+		AMB_RS11495	0.35	-0.5
2,473,245	+		AMB_RS11495	0.35	+0.2
2,473,245	+		AMB_RS11495	0.35	-0.2
2,473,245	+		AMB_RS11495	0.35	+0.5
2,473,245	+		AMB_RS11495	0.35	+0.2
2,473,245	+		AMB_RS11495	0.35	-0.3
2,473,245	+		AMB_RS11495	0.35	-0.6
2,473,245	+		AMB_RS11495	0.35	+0.1
2,473,245	+		AMB_RS11495	0.35	-1.3
2,473,245	+		AMB_RS11495	0.35	+0.6
2,473,245	+		AMB_RS11495	0.35	+0.1
2,473,245	+		AMB_RS11495	0.35	+0.5
2,473,245	+		AMB_RS11495	0.35	+0.5
2,473,246	-		AMB_RS11495	0.35	-0.7
2,473,246	-		AMB_RS11495	0.35	-0.1
2,473,246	-		AMB_RS11495	0.35	-0.1
2,473,246	-		AMB_RS11495	0.35	+0.1
2,473,246	-		AMB_RS11495	0.35	-0.6
2,473,246	-		AMB_RS11495	0.35	-0.3
2,473,246	-		AMB_RS11495	0.35	-1.5
2,473,246	-		AMB_RS11495	0.35	-0.3
2,473,247	+		AMB_RS11495	0.35	-0.2
2,473,247	+		AMB_RS11495	0.35	-0.2
2,473,247	+		AMB_RS11495	0.35	-0.5
2,473,247	+		AMB_RS11495	0.35	-1.1
2,473,247	+		AMB_RS11495	0.35	-2.1
2,473,247	+		AMB_RS11495	0.35	-0.6
2,473,247	+		AMB_RS11495	0.35	+0.1
2,473,248	-		AMB_RS11495	0.35	+0.3
2,473,248	-		AMB_RS11495	0.35	+0.8
2,473,248	-		AMB_RS11495	0.35	-0.2
2,473,248	-		AMB_RS11495	0.35	-0.7
2,473,248	-		AMB_RS11495	0.35	+0.5
2,473,248	-		AMB_RS11495	0.35	-1.8
2,473,248	-		AMB_RS11495	0.35	-0.9
2,473,376	+		AMB_RS11495	0.49	-1.5
2,473,376	+		AMB_RS11495	0.49	-1.0
2,473,376	+		AMB_RS11495	0.49	-0.6
2,473,377	-		AMB_RS11495	0.49	+0.9
2,473,377	-		AMB_RS11495	0.49	+0.2
2,473,377	-		AMB_RS11495	0.49	-1.3
2,473,377	-		AMB_RS11495	0.49	-0.1
2,473,529	+		AMB_RS11495	0.65	+0.2
2,473,529	+		AMB_RS11495	0.65	+0.1
2,473,529	+		AMB_RS11495	0.65	-0.1
2,473,539	+		AMB_RS11495	0.67	-0.6
2,473,539	+		AMB_RS11495	0.67	+0.6
2,473,539	+		AMB_RS11495	0.67	-0.3
2,473,539	+		AMB_RS11495	0.67	-1.4
2,473,539	+		AMB_RS11495	0.67	-0.1
2,473,539	+		AMB_RS11495	0.67	+0.5
2,473,540	-		AMB_RS11495	0.67	-0.1
2,473,540	-		AMB_RS11495	0.67	-0.4
2,473,540	-		AMB_RS11495	0.67	-0.5
2,473,540	-		AMB_RS11495	0.67	-0.6
2,473,619	+		AMB_RS11495	0.75	-0.5
2,473,619	+		AMB_RS11495	0.75	-0.6
2,473,677	+		AMB_RS11495	0.81	+0.0
2,473,678	-		AMB_RS11495	0.81	-0.1
2,473,766	+				-0.1
2,473,766	+				-0.4
2,473,766	+				+0.3
2,473,766	+				-0.7
2,473,767	-				-1.1
2,473,767	-				-0.2
2,473,797	+				-0.9
2,473,797	+				+0.0
2,473,797	+				-0.6
2,473,797	+				+0.3
2,473,797	+				-0.3
2,473,797	+				-0.3
2,473,797	+				-0.7
2,473,798	-				-0.3
2,473,798	-				+0.4
2,473,798	-				-0.0
2,473,798	-				+2.4
2,473,798	-				-0.3
2,473,798	-				-0.6
2,473,836	+				-0.4
2,473,837	-				-0.3
2,473,844	+				-0.9
2,473,845	-				+0.1
2,473,845	-				-1.3
2,473,888	+				-0.7
2,473,889	-				-4.0
2,473,900	+				-0.3
2,473,902	-				+0.4
2,473,992	+				-0.1
2,473,992	+				+2.6
2,474,142	-		AMB_RS11500	0.35	-0.2
2,474,216	+		AMB_RS11500	0.51	-0.6
2,474,216	+		AMB_RS11500	0.51	-0.1
2,474,360	+		AMB_RS11500	0.82	-0.5
2,474,363	+		AMB_RS11500	0.83	+1.0
2,474,441	+				-0.5
2,474,442	-				-1.3
2,474,469	+				+0.4
2,474,470	-				-1.6
2,474,470	-				-0.5
2,474,505	+				+0.6
2,474,505	+				-0.4
2,474,506	-				-0.5
2,474,507	+				-0.0
2,474,507	+				-1.1
2,474,507	+				-0.6
2,474,507	+				-0.6
2,474,507	+				+0.1
2,474,508	-				+0.2
2,474,508	-				+2.3
2,474,508	-				+0.3
2,474,508	-				+0.2
2,474,670	-				+0.0
2,474,696	+				-1.0
2,474,839	-		AMB_RS11505	0.25	-0.5