Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS11425

Experiment: 30_nonmag_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS11415 and AMB_RS11420 are separated by 93 nucleotidesAMB_RS11420 and AMB_RS11425 are separated by 4 nucleotidesAMB_RS11425 and AMB_RS11430 overlap by 4 nucleotidesAMB_RS11430 and AMB_RS11435 are separated by 10 nucleotides AMB_RS11415: AMB_RS11415 - holo-ACP synthase, at 2,460,576 to 2,460,971 _RS11415 AMB_RS11420: AMB_RS11420 - signal peptidase I, at 2,461,065 to 2,461,808 _RS11420 AMB_RS11425: AMB_RS11425 - ribonuclease III, at 2,461,813 to 2,462,499 _RS11425 AMB_RS11430: AMB_RS11430 - GTPase Era, at 2,462,496 to 2,463,407 _RS11430 AMB_RS11435: AMB_RS11435 - hypothetical protein, at 2,463,418 to 2,463,633 _RS11435 Position (kb) 2461 2462 2463Strain fitness (log2 ratio) -1 0 1at 2461.939 kb on + strand, within AMB_RS11425at 2462.345 kb on - strand, within AMB_RS11425at 2462.414 kb on + strand, within AMB_RS11425at 2462.414 kb on + strand, within AMB_RS11425at 2462.414 kb on + strand, within AMB_RS11425at 2463.207 kb on + strand, within AMB_RS11430at 2463.375 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_1
remove
2,461,939 + AMB_RS11425 0.18 -0.0
2,462,345 - AMB_RS11425 0.77 +0.6
2,462,414 + AMB_RS11425 0.87 +0.0
2,462,414 + AMB_RS11425 0.87 -1.5
2,462,414 + AMB_RS11425 0.87 +0.9
2,463,207 + AMB_RS11430 0.78 -0.5
2,463,375 + +1.3

Or see this region's nucleotide sequence