Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07320

Experiment: 30_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07310 and AMB_RS07315 are separated by 56 nucleotidesAMB_RS07315 and AMB_RS07320 overlap by 29 nucleotidesAMB_RS07320 and AMB_RS07325 are separated by 102 nucleotides AMB_RS07310: AMB_RS07310 - hypothetical protein, at 1,578,775 to 1,580,058 _RS07310 AMB_RS07315: AMB_RS07315 - hypothetical protein, at 1,580,115 to 1,580,648 _RS07315 AMB_RS07320: AMB_RS07320 - serine/threonine protein phosphatase, at 1,580,620 to 1,581,441 _RS07320 AMB_RS07325: AMB_RS07325 - succinoglycan biosynthesis transport protein exoP, at 1,581,544 to 1,583,754 _RS07325 Position (kb) 1580 1581 1582Strain fitness (log2 ratio) -3 -2 -1 0 1at 1579.652 kb on - strand, within AMB_RS07310at 1579.652 kb on - strand, within AMB_RS07310at 1579.654 kb on + strand, within AMB_RS07310at 1579.654 kb on + strand, within AMB_RS07310at 1579.654 kb on + strand, within AMB_RS07310at 1579.655 kb on - strand, within AMB_RS07310at 1579.655 kb on - strand, within AMB_RS07310at 1579.655 kb on - strand, within AMB_RS07310at 1579.655 kb on - strand, within AMB_RS07310at 1579.669 kb on + strand, within AMB_RS07310at 1579.669 kb on + strand, within AMB_RS07310at 1579.808 kb on - strand, within AMB_RS07310at 1579.842 kb on + strand, within AMB_RS07310at 1579.842 kb on + strand, within AMB_RS07310at 1579.843 kb on - strand, within AMB_RS07310at 1579.843 kb on - strand, within AMB_RS07310at 1579.882 kb on + strand, within AMB_RS07310at 1579.882 kb on + strand, within AMB_RS07310at 1579.882 kb on + strand, within AMB_RS07310at 1579.882 kb on + strand, within AMB_RS07310at 1579.882 kb on + strand, within AMB_RS07310at 1579.882 kb on + strand, within AMB_RS07310at 1579.883 kb on - strand, within AMB_RS07310at 1579.883 kb on - strand, within AMB_RS07310at 1579.883 kb on - strand, within AMB_RS07310at 1579.883 kb on - strand, within AMB_RS07310at 1579.884 kb on + strand, within AMB_RS07310at 1579.885 kb on - strand, within AMB_RS07310at 1579.885 kb on - strand, within AMB_RS07310at 1579.885 kb on - strand, within AMB_RS07310at 1579.905 kb on + strand, within AMB_RS07310at 1579.906 kb on - strand, within AMB_RS07310at 1579.936 kb on + strandat 1579.936 kb on + strandat 1579.936 kb on + strandat 1579.936 kb on + strandat 1579.936 kb on + strandat 1579.952 kb on - strandat 1579.952 kb on - strandat 1579.957 kb on + strandat 1579.957 kb on + strandat 1579.957 kb on + strandat 1579.958 kb on - strandat 1579.972 kb on + strandat 1579.995 kb on + strandat 1579.995 kb on + strandat 1579.995 kb on + strandat 1579.995 kb on + strandat 1579.995 kb on + strandat 1579.995 kb on + strandat 1579.995 kb on + strandat 1579.996 kb on - strandat 1579.996 kb on - strandat 1580.015 kb on - strandat 1580.054 kb on - strandat 1580.082 kb on + strandat 1580.082 kb on + strandat 1580.083 kb on - strandat 1580.089 kb on + strandat 1580.090 kb on - strandat 1580.196 kb on + strand, within AMB_RS07315at 1580.197 kb on - strand, within AMB_RS07315at 1580.197 kb on - strand, within AMB_RS07315at 1580.197 kb on - strand, within AMB_RS07315at 1580.416 kb on - strand, within AMB_RS07315at 1580.466 kb on + strand, within AMB_RS07315at 1580.466 kb on + strand, within AMB_RS07315at 1580.466 kb on + strand, within AMB_RS07315at 1580.467 kb on - strand, within AMB_RS07315at 1580.467 kb on - strand, within AMB_RS07315at 1580.516 kb on + strand, within AMB_RS07315at 1580.516 kb on + strand, within AMB_RS07315at 1580.517 kb on - strand, within AMB_RS07315at 1580.517 kb on - strand, within AMB_RS07315at 1580.661 kb on + strandat 1580.661 kb on + strandat 1580.723 kb on + strand, within AMB_RS07320at 1580.912 kb on + strand, within AMB_RS07320at 1580.912 kb on + strand, within AMB_RS07320at 1580.912 kb on + strand, within AMB_RS07320at 1580.912 kb on + strand, within AMB_RS07320at 1580.913 kb on - strand, within AMB_RS07320at 1580.913 kb on - strand, within AMB_RS07320at 1580.913 kb on - strand, within AMB_RS07320at 1580.913 kb on - strand, within AMB_RS07320at 1581.048 kb on - strand, within AMB_RS07320at 1581.048 kb on - strand, within AMB_RS07320at 1581.074 kb on + strand, within AMB_RS07320at 1581.075 kb on - strand, within AMB_RS07320at 1581.230 kb on + strand, within AMB_RS07320at 1581.230 kb on + strand, within AMB_RS07320at 1581.231 kb on - strand, within AMB_RS07320at 1581.231 kb on - strand, within AMB_RS07320at 1581.354 kb on - strand, within AMB_RS07320at 1581.354 kb on - strand, within AMB_RS07320at 1581.354 kb on - strand, within AMB_RS07320at 1581.354 kb on - strand, within AMB_RS07320at 1581.442 kb on - strandat 1581.470 kb on + strandat 1581.471 kb on - strandat 1581.499 kb on + strandat 1581.500 kb on - strandat 1581.503 kb on - strandat 1581.518 kb on + strandat 1581.609 kb on + strandat 1581.629 kb on + strandat 1581.724 kb on + strandat 1581.724 kb on + strandat 1581.889 kb on + strand, within AMB_RS07325at 1581.890 kb on - strand, within AMB_RS07325at 1581.890 kb on - strand, within AMB_RS07325at 1582.159 kb on + strand, within AMB_RS07325at 1582.159 kb on + strand, within AMB_RS07325at 1582.159 kb on + strand, within AMB_RS07325at 1582.159 kb on + strand, within AMB_RS07325at 1582.159 kb on + strand, within AMB_RS07325at 1582.159 kb on + strand, within AMB_RS07325at 1582.159 kb on + strand, within AMB_RS07325at 1582.160 kb on - strand, within AMB_RS07325at 1582.160 kb on - strand, within AMB_RS07325at 1582.160 kb on - strand, within AMB_RS07325at 1582.160 kb on - strand, within AMB_RS07325

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_1
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1,579,652 - AMB_RS07310 0.68 -0.9
1,579,652 - AMB_RS07310 0.68 +0.3
1,579,654 + AMB_RS07310 0.68 +0.1
1,579,654 + AMB_RS07310 0.68 +0.5
1,579,654 + AMB_RS07310 0.68 -0.0
1,579,655 - AMB_RS07310 0.69 +1.0
1,579,655 - AMB_RS07310 0.69 -0.1
1,579,655 - AMB_RS07310 0.69 -0.9
1,579,655 - AMB_RS07310 0.69 -2.1
1,579,669 + AMB_RS07310 0.70 -0.5
1,579,669 + AMB_RS07310 0.70 +0.1
1,579,808 - AMB_RS07310 0.80 -0.1
1,579,842 + AMB_RS07310 0.83 -0.1
1,579,842 + AMB_RS07310 0.83 -2.8
1,579,843 - AMB_RS07310 0.83 -1.8
1,579,843 - AMB_RS07310 0.83 -0.5
1,579,882 + AMB_RS07310 0.86 +0.1
1,579,882 + AMB_RS07310 0.86 -0.4
1,579,882 + AMB_RS07310 0.86 -0.6
1,579,882 + AMB_RS07310 0.86 -0.8
1,579,882 + AMB_RS07310 0.86 -0.7
1,579,882 + AMB_RS07310 0.86 -1.1
1,579,883 - AMB_RS07310 0.86 +0.9
1,579,883 - AMB_RS07310 0.86 -0.8
1,579,883 - AMB_RS07310 0.86 -0.4
1,579,883 - AMB_RS07310 0.86 -0.9
1,579,884 + AMB_RS07310 0.86 +0.1
1,579,885 - AMB_RS07310 0.86 +0.4
1,579,885 - AMB_RS07310 0.86 -0.3
1,579,885 - AMB_RS07310 0.86 -0.2
1,579,905 + AMB_RS07310 0.88 -0.4
1,579,906 - AMB_RS07310 0.88 -0.7
1,579,936 + -0.2
1,579,936 + -0.6
1,579,936 + -0.5
1,579,936 + +1.4
1,579,936 + +0.2
1,579,952 - -2.1
1,579,952 - -0.1
1,579,957 + -1.5
1,579,957 + +0.8
1,579,957 + -0.6
1,579,958 - -0.2
1,579,972 + -0.2
1,579,995 + +0.7
1,579,995 + -0.5
1,579,995 + -0.3
1,579,995 + -0.0
1,579,995 + -1.4
1,579,995 + -0.3
1,579,995 + -0.6
1,579,996 - +0.5
1,579,996 - -0.9
1,580,015 - -0.2
1,580,054 - -0.3
1,580,082 + +0.4
1,580,082 + +0.4
1,580,083 - -0.8
1,580,089 + +0.1
1,580,090 - -0.6
1,580,196 + AMB_RS07315 0.15 -0.0
1,580,197 - AMB_RS07315 0.15 -0.7
1,580,197 - AMB_RS07315 0.15 -0.2
1,580,197 - AMB_RS07315 0.15 +1.0
1,580,416 - AMB_RS07315 0.56 -1.0
1,580,466 + AMB_RS07315 0.66 -1.0
1,580,466 + AMB_RS07315 0.66 -1.8
1,580,466 + AMB_RS07315 0.66 +0.1
1,580,467 - AMB_RS07315 0.66 -0.2
1,580,467 - AMB_RS07315 0.66 +0.7
1,580,516 + AMB_RS07315 0.75 +0.1
1,580,516 + AMB_RS07315 0.75 +1.1
1,580,517 - AMB_RS07315 0.75 -0.2
1,580,517 - AMB_RS07315 0.75 -0.8
1,580,661 + -0.2
1,580,661 + -0.2
1,580,723 + AMB_RS07320 0.13 -0.3
1,580,912 + AMB_RS07320 0.36 +0.1
1,580,912 + AMB_RS07320 0.36 +0.8
1,580,912 + AMB_RS07320 0.36 +0.8
1,580,912 + AMB_RS07320 0.36 -0.3
1,580,913 - AMB_RS07320 0.36 -0.8
1,580,913 - AMB_RS07320 0.36 -0.1
1,580,913 - AMB_RS07320 0.36 -0.2
1,580,913 - AMB_RS07320 0.36 -0.0
1,581,048 - AMB_RS07320 0.52 -3.2
1,581,048 - AMB_RS07320 0.52 +0.1
1,581,074 + AMB_RS07320 0.55 +1.2
1,581,075 - AMB_RS07320 0.55 +0.6
1,581,230 + AMB_RS07320 0.74 +1.4
1,581,230 + AMB_RS07320 0.74 -0.3
1,581,231 - AMB_RS07320 0.74 -0.9
1,581,231 - AMB_RS07320 0.74 -1.1
1,581,354 - AMB_RS07320 0.89 -0.4
1,581,354 - AMB_RS07320 0.89 -0.4
1,581,354 - AMB_RS07320 0.89 -0.2
1,581,354 - AMB_RS07320 0.89 +1.4
1,581,442 - +1.4
1,581,470 + -0.2
1,581,471 - -0.1
1,581,499 + -0.9
1,581,500 - -1.0
1,581,503 - +0.1
1,581,518 + -0.8
1,581,609 + +0.5
1,581,629 + +1.1
1,581,724 + -0.2
1,581,724 + -0.1
1,581,889 + AMB_RS07325 0.16 +1.2
1,581,890 - AMB_RS07325 0.16 -0.9
1,581,890 - AMB_RS07325 0.16 -1.2
1,582,159 + AMB_RS07325 0.28 -1.5
1,582,159 + AMB_RS07325 0.28 -0.7
1,582,159 + AMB_RS07325 0.28 +1.1
1,582,159 + AMB_RS07325 0.28 -0.2
1,582,159 + AMB_RS07325 0.28 -0.2
1,582,159 + AMB_RS07325 0.28 -0.4
1,582,159 + AMB_RS07325 0.28 +0.9
1,582,160 - AMB_RS07325 0.28 -0.6
1,582,160 - AMB_RS07325 0.28 +0.5
1,582,160 - AMB_RS07325 0.28 +0.2
1,582,160 - AMB_RS07325 0.28 -0.7

Or see this region's nucleotide sequence