Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07230

Experiment: 30_nonmag_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS07225 and AMB_RS07230 are separated by 66 nucleotidesAMB_RS07230 and AMB_RS07235 overlap by 4 nucleotides AMB_RS07225: AMB_RS07225 - PAS domain S-box protein, at 1,557,602 to 1,559,095 _RS07225 AMB_RS07230: AMB_RS07230 - response regulator, at 1,559,162 to 1,559,596 _RS07230 AMB_RS07235: AMB_RS07235 - signal transduction histidine kinase, at 1,559,593 to 1,561,488 _RS07235 Position (kb) 1559 1560Strain fitness (log2 ratio) -2 -1 0 1 2at 1558.424 kb on + strand, within AMB_RS07225at 1558.425 kb on - strand, within AMB_RS07225at 1558.425 kb on - strand, within AMB_RS07225at 1558.472 kb on + strand, within AMB_RS07225at 1558.472 kb on + strand, within AMB_RS07225at 1558.472 kb on + strand, within AMB_RS07225at 1558.472 kb on + strand, within AMB_RS07225at 1558.472 kb on + strand, within AMB_RS07225at 1558.472 kb on + strand, within AMB_RS07225at 1558.472 kb on + strand, within AMB_RS07225at 1558.472 kb on + strand, within AMB_RS07225at 1558.472 kb on + strand, within AMB_RS07225at 1558.473 kb on - strand, within AMB_RS07225at 1558.473 kb on - strand, within AMB_RS07225at 1558.473 kb on - strand, within AMB_RS07225at 1558.473 kb on - strand, within AMB_RS07225at 1558.473 kb on - strand, within AMB_RS07225at 1558.529 kb on + strand, within AMB_RS07225at 1558.529 kb on + strand, within AMB_RS07225at 1558.530 kb on - strand, within AMB_RS07225at 1558.530 kb on - strand, within AMB_RS07225at 1558.530 kb on - strand, within AMB_RS07225at 1558.530 kb on - strand, within AMB_RS07225at 1558.530 kb on - strand, within AMB_RS07225at 1558.530 kb on - strand, within AMB_RS07225at 1558.530 kb on - strand, within AMB_RS07225at 1558.530 kb on - strand, within AMB_RS07225at 1558.530 kb on - strand, within AMB_RS07225at 1558.592 kb on + strand, within AMB_RS07225at 1558.592 kb on + strand, within AMB_RS07225at 1558.791 kb on - strand, within AMB_RS07225at 1558.791 kb on - strand, within AMB_RS07225at 1558.947 kb on - strandat 1558.947 kb on - strandat 1558.947 kb on - strandat 1558.947 kb on - strandat 1558.947 kb on - strandat 1559.121 kb on - strandat 1559.144 kb on + strandat 1559.144 kb on + strandat 1559.144 kb on + strandat 1559.145 kb on - strandat 1559.484 kb on - strand, within AMB_RS07230at 1559.491 kb on - strand, within AMB_RS07230at 1559.504 kb on + strand, within AMB_RS07230at 1559.505 kb on - strand, within AMB_RS07230at 1559.505 kb on - strand, within AMB_RS07230at 1559.505 kb on - strand, within AMB_RS07230at 1559.505 kb on - strand, within AMB_RS07230at 1559.914 kb on + strand, within AMB_RS07235at 1559.914 kb on + strand, within AMB_RS07235at 1559.915 kb on - strand, within AMB_RS07235at 1559.915 kb on - strand, within AMB_RS07235at 1559.915 kb on - strand, within AMB_RS07235at 1559.915 kb on - strand, within AMB_RS07235at 1559.915 kb on - strand, within AMB_RS07235at 1559.965 kb on + strand, within AMB_RS07235at 1559.965 kb on + strand, within AMB_RS07235at 1559.966 kb on - strand, within AMB_RS07235at 1559.966 kb on - strand, within AMB_RS07235at 1560.273 kb on + strand, within AMB_RS07235at 1560.401 kb on + strand, within AMB_RS07235at 1560.402 kb on - strand, within AMB_RS07235

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_1
remove
1,558,424 + AMB_RS07225 0.55 -0.5
1,558,425 - AMB_RS07225 0.55 +0.1
1,558,425 - AMB_RS07225 0.55 -0.9
1,558,472 + AMB_RS07225 0.58 -0.1
1,558,472 + AMB_RS07225 0.58 +0.1
1,558,472 + AMB_RS07225 0.58 -0.8
1,558,472 + AMB_RS07225 0.58 -0.6
1,558,472 + AMB_RS07225 0.58 -1.2
1,558,472 + AMB_RS07225 0.58 -0.2
1,558,472 + AMB_RS07225 0.58 -0.1
1,558,472 + AMB_RS07225 0.58 +0.0
1,558,472 + AMB_RS07225 0.58 -2.1
1,558,473 - AMB_RS07225 0.58 -0.5
1,558,473 - AMB_RS07225 0.58 +0.5
1,558,473 - AMB_RS07225 0.58 -0.6
1,558,473 - AMB_RS07225 0.58 -0.2
1,558,473 - AMB_RS07225 0.58 -1.7
1,558,529 + AMB_RS07225 0.62 +0.4
1,558,529 + AMB_RS07225 0.62 +0.1
1,558,530 - AMB_RS07225 0.62 +1.5
1,558,530 - AMB_RS07225 0.62 -0.3
1,558,530 - AMB_RS07225 0.62 -0.3
1,558,530 - AMB_RS07225 0.62 -0.3
1,558,530 - AMB_RS07225 0.62 -0.1
1,558,530 - AMB_RS07225 0.62 -2.6
1,558,530 - AMB_RS07225 0.62 +0.6
1,558,530 - AMB_RS07225 0.62 +0.6
1,558,530 - AMB_RS07225 0.62 -1.2
1,558,592 + AMB_RS07225 0.66 -1.5
1,558,592 + AMB_RS07225 0.66 -0.0
1,558,791 - AMB_RS07225 0.80 +1.2
1,558,791 - AMB_RS07225 0.80 -1.7
1,558,947 - -0.5
1,558,947 - -2.2
1,558,947 - +2.0
1,558,947 - -0.6
1,558,947 - -0.0
1,559,121 - -1.1
1,559,144 + +2.0
1,559,144 + +0.2
1,559,144 + +0.3
1,559,145 - -0.4
1,559,484 - AMB_RS07230 0.74 -0.8
1,559,491 - AMB_RS07230 0.76 -2.1
1,559,504 + AMB_RS07230 0.79 -0.2
1,559,505 - AMB_RS07230 0.79 -1.2
1,559,505 - AMB_RS07230 0.79 -0.8
1,559,505 - AMB_RS07230 0.79 -0.3
1,559,505 - AMB_RS07230 0.79 +0.8
1,559,914 + AMB_RS07235 0.17 +1.1
1,559,914 + AMB_RS07235 0.17 -0.2
1,559,915 - AMB_RS07235 0.17 +0.7
1,559,915 - AMB_RS07235 0.17 -0.2
1,559,915 - AMB_RS07235 0.17 -0.2
1,559,915 - AMB_RS07235 0.17 -0.6
1,559,915 - AMB_RS07235 0.17 +0.1
1,559,965 + AMB_RS07235 0.20 -0.4
1,559,965 + AMB_RS07235 0.20 -0.2
1,559,966 - AMB_RS07235 0.20 +1.7
1,559,966 - AMB_RS07235 0.20 -1.2
1,560,273 + AMB_RS07235 0.36 -0.7
1,560,401 + AMB_RS07235 0.43 +0.1
1,560,402 - AMB_RS07235 0.43 -2.4

Or see this region's nucleotide sequence