Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07100

Experiment: 30_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07095 and AMB_RS07100 overlap by 1 nucleotidesAMB_RS07100 and AMB_RS07105 overlap by 10 nucleotidesAMB_RS07105 and AMB_RS07110 are separated by 4 nucleotides AMB_RS07095: AMB_RS07095 - protein nirF, at 1,527,014 to 1,528,288 _RS07095 AMB_RS07100: AMB_RS07100 - Lrp/AsnC family transcriptional regulator, at 1,528,288 to 1,528,866 _RS07100 AMB_RS07105: AMB_RS07105 - Lrp/AsnC family transcriptional regulator, at 1,528,857 to 1,529,363 _RS07105 AMB_RS07110: AMB_RS07110 - Lrp/AsnC family transcriptional regulator, at 1,529,368 to 1,529,811 _RS07110 Position (kb) 1528 1529Strain fitness (log2 ratio) -2 -1 0 1 2at 1527.315 kb on - strand, within AMB_RS07095at 1527.315 kb on - strand, within AMB_RS07095at 1527.474 kb on - strand, within AMB_RS07095at 1527.605 kb on + strand, within AMB_RS07095at 1527.605 kb on + strand, within AMB_RS07095at 1527.605 kb on + strand, within AMB_RS07095at 1527.605 kb on + strand, within AMB_RS07095at 1527.605 kb on + strand, within AMB_RS07095at 1527.605 kb on + strand, within AMB_RS07095at 1527.605 kb on + strand, within AMB_RS07095at 1527.605 kb on + strand, within AMB_RS07095at 1527.605 kb on + strand, within AMB_RS07095at 1527.606 kb on - strand, within AMB_RS07095at 1527.606 kb on - strand, within AMB_RS07095at 1527.606 kb on - strand, within AMB_RS07095at 1527.606 kb on - strand, within AMB_RS07095at 1527.607 kb on + strand, within AMB_RS07095at 1527.607 kb on + strand, within AMB_RS07095at 1527.608 kb on - strand, within AMB_RS07095at 1527.614 kb on + strand, within AMB_RS07095at 1527.615 kb on - strand, within AMB_RS07095at 1527.615 kb on - strand, within AMB_RS07095at 1527.677 kb on + strand, within AMB_RS07095at 1527.677 kb on + strand, within AMB_RS07095at 1527.677 kb on + strand, within AMB_RS07095at 1527.677 kb on + strand, within AMB_RS07095at 1527.678 kb on - strand, within AMB_RS07095at 1527.678 kb on - strand, within AMB_RS07095at 1527.686 kb on - strand, within AMB_RS07095at 1527.702 kb on - strand, within AMB_RS07095at 1527.734 kb on + strand, within AMB_RS07095at 1527.802 kb on - strand, within AMB_RS07095at 1527.851 kb on + strand, within AMB_RS07095at 1527.852 kb on - strand, within AMB_RS07095at 1528.050 kb on - strand, within AMB_RS07095at 1528.050 kb on - strand, within AMB_RS07095at 1528.193 kb on + strandat 1528.193 kb on + strandat 1528.194 kb on - strandat 1528.273 kb on + strandat 1528.411 kb on + strand, within AMB_RS07100at 1528.419 kb on - strand, within AMB_RS07100at 1528.696 kb on + strand, within AMB_RS07100at 1528.696 kb on + strand, within AMB_RS07100at 1528.697 kb on - strand, within AMB_RS07100at 1528.697 kb on - strand, within AMB_RS07100at 1528.864 kb on + strandat 1528.864 kb on + strandat 1528.864 kb on + strandat 1528.864 kb on + strandat 1528.865 kb on - strandat 1528.865 kb on - strandat 1528.865 kb on - strandat 1529.181 kb on + strand, within AMB_RS07105at 1529.181 kb on + strand, within AMB_RS07105at 1529.182 kb on - strand, within AMB_RS07105at 1529.182 kb on - strand, within AMB_RS07105at 1529.272 kb on - strand, within AMB_RS07105at 1529.361 kb on + strandat 1529.650 kb on + strand, within AMB_RS07110at 1529.650 kb on + strand, within AMB_RS07110at 1529.650 kb on + strand, within AMB_RS07110at 1529.785 kb on + strandat 1529.785 kb on + strandat 1529.785 kb on + strandat 1529.786 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_1
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1,527,315 - AMB_RS07095 0.24 +1.3
1,527,315 - AMB_RS07095 0.24 +0.9
1,527,474 - AMB_RS07095 0.36 +0.4
1,527,605 + AMB_RS07095 0.46 +0.0
1,527,605 + AMB_RS07095 0.46 -0.6
1,527,605 + AMB_RS07095 0.46 +0.5
1,527,605 + AMB_RS07095 0.46 -0.5
1,527,605 + AMB_RS07095 0.46 -0.9
1,527,605 + AMB_RS07095 0.46 -0.3
1,527,605 + AMB_RS07095 0.46 -2.1
1,527,605 + AMB_RS07095 0.46 -0.6
1,527,605 + AMB_RS07095 0.46 +1.1
1,527,606 - AMB_RS07095 0.46 -0.4
1,527,606 - AMB_RS07095 0.46 +0.2
1,527,606 - AMB_RS07095 0.46 +0.0
1,527,606 - AMB_RS07095 0.46 -0.5
1,527,607 + AMB_RS07095 0.47 -0.2
1,527,607 + AMB_RS07095 0.47 -0.8
1,527,608 - AMB_RS07095 0.47 +0.4
1,527,614 + AMB_RS07095 0.47 -0.3
1,527,615 - AMB_RS07095 0.47 -0.7
1,527,615 - AMB_RS07095 0.47 -0.5
1,527,677 + AMB_RS07095 0.52 +0.7
1,527,677 + AMB_RS07095 0.52 +0.9
1,527,677 + AMB_RS07095 0.52 +0.4
1,527,677 + AMB_RS07095 0.52 -0.3
1,527,678 - AMB_RS07095 0.52 +0.1
1,527,678 - AMB_RS07095 0.52 +1.6
1,527,686 - AMB_RS07095 0.53 -0.4
1,527,702 - AMB_RS07095 0.54 -1.6
1,527,734 + AMB_RS07095 0.56 +0.6
1,527,802 - AMB_RS07095 0.62 -0.0
1,527,851 + AMB_RS07095 0.66 +0.6
1,527,852 - AMB_RS07095 0.66 -1.0
1,528,050 - AMB_RS07095 0.81 -0.6
1,528,050 - AMB_RS07095 0.81 -0.2
1,528,193 + -0.5
1,528,193 + -0.6
1,528,194 - +0.7
1,528,273 + +0.0
1,528,411 + AMB_RS07100 0.21 -0.4
1,528,419 - AMB_RS07100 0.23 +2.2
1,528,696 + AMB_RS07100 0.70 -1.6
1,528,696 + AMB_RS07100 0.70 -1.4
1,528,697 - AMB_RS07100 0.71 -1.1
1,528,697 - AMB_RS07100 0.71 -1.6
1,528,864 + -0.1
1,528,864 + +0.8
1,528,864 + -0.8
1,528,864 + -0.7
1,528,865 - +1.1
1,528,865 - -0.3
1,528,865 - -1.8
1,529,181 + AMB_RS07105 0.64 -0.2
1,529,181 + AMB_RS07105 0.64 +0.9
1,529,182 - AMB_RS07105 0.64 -0.8
1,529,182 - AMB_RS07105 0.64 +0.4
1,529,272 - AMB_RS07105 0.82 -0.6
1,529,361 + -0.9
1,529,650 + AMB_RS07110 0.64 -0.4
1,529,650 + AMB_RS07110 0.64 -1.2
1,529,650 + AMB_RS07110 0.64 -1.2
1,529,785 + -2.1
1,529,785 + -0.3
1,529,785 + -0.0
1,529,786 - -0.8

Or see this region's nucleotide sequence