Experiment: 30_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS05980 and AMB_RS05985 are separated by 2 nucleotides AMB_RS05985 and AMB_RS05990 are separated by 26 nucleotides AMB_RS05990 and AMB_RS05995 are separated by 15 nucleotides
AMB_RS05980: AMB_RS05980 - hypothetical protein, at 1,253,928 to 1,254,887
_RS05980
AMB_RS05985: AMB_RS05985 - hypothetical protein, at 1,254,890 to 1,255,405
_RS05985
AMB_RS05990: AMB_RS05990 - hypothetical protein, at 1,255,432 to 1,255,617
_RS05990
AMB_RS05995: AMB_RS05995 - hypothetical protein, at 1,255,633 to 1,256,607
_RS05995
Position (kb) 1255
1256 Strain fitness (log2 ratio) -1
0
1
2 at 1255.531 kb on + strand, within AMB_RS05990 at 1255.531 kb on + strand, within AMB_RS05990 at 1255.532 kb on - strand, within AMB_RS05990 at 1255.768 kb on + strand, within AMB_RS05995 at 1255.768 kb on + strand, within AMB_RS05995 at 1255.769 kb on - strand, within AMB_RS05995 at 1255.769 kb on - strand, within AMB_RS05995 at 1255.769 kb on - strand, within AMB_RS05995 at 1255.780 kb on + strand, within AMB_RS05995 at 1255.780 kb on + strand, within AMB_RS05995 at 1255.781 kb on - strand, within AMB_RS05995 at 1256.272 kb on + strand, within AMB_RS05995 at 1256.272 kb on + strand, within AMB_RS05995 at 1256.368 kb on + strand, within AMB_RS05995 at 1256.368 kb on + strand, within AMB_RS05995 at 1256.368 kb on + strand, within AMB_RS05995 at 1256.368 kb on + strand, within AMB_RS05995 at 1256.368 kb on + strand, within AMB_RS05995 at 1256.368 kb on + strand, within AMB_RS05995 at 1256.368 kb on + strand, within AMB_RS05995 at 1256.368 kb on + strand, within AMB_RS05995 at 1256.369 kb on - strand, within AMB_RS05995 at 1256.369 kb on - strand, within AMB_RS05995 at 1256.369 kb on - strand, within AMB_RS05995 at 1256.548 kb on + strand at 1256.549 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_1 remove 1,255,531 + AMB_RS05990 0.53 -1.5 1,255,531 + AMB_RS05990 0.53 -1.7 1,255,532 - AMB_RS05990 0.54 -1.0 1,255,768 + AMB_RS05995 0.14 +0.3 1,255,768 + AMB_RS05995 0.14 +1.0 1,255,769 - AMB_RS05995 0.14 -0.3 1,255,769 - AMB_RS05995 0.14 +0.8 1,255,769 - AMB_RS05995 0.14 -0.8 1,255,780 + AMB_RS05995 0.15 -0.4 1,255,780 + AMB_RS05995 0.15 -0.6 1,255,781 - AMB_RS05995 0.15 -1.6 1,256,272 + AMB_RS05995 0.66 -0.6 1,256,272 + AMB_RS05995 0.66 -0.3 1,256,368 + AMB_RS05995 0.75 +0.1 1,256,368 + AMB_RS05995 0.75 -1.4 1,256,368 + AMB_RS05995 0.75 -0.6 1,256,368 + AMB_RS05995 0.75 -0.3 1,256,368 + AMB_RS05995 0.75 -0.9 1,256,368 + AMB_RS05995 0.75 -0.3 1,256,368 + AMB_RS05995 0.75 +1.4 1,256,368 + AMB_RS05995 0.75 -0.3 1,256,369 - AMB_RS05995 0.75 +2.3 1,256,369 - AMB_RS05995 0.75 +0.4 1,256,369 - AMB_RS05995 0.75 -0.4 1,256,548 + -0.8 1,256,549 - -0.1
Or see this region's nucleotide sequence