Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04930

Experiment: 30_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04920 and AMB_RS04925 are separated by 36 nucleotidesAMB_RS04925 and AMB_RS04930 overlap by 1 nucleotidesAMB_RS04930 and AMB_RS23165 are separated by 87 nucleotides AMB_RS04920: AMB_RS04920 - MFS transporter, at 1,021,643 to 1,022,902 _RS04920 AMB_RS04925: AMB_RS04925 - hypothetical protein, at 1,022,939 to 1,023,148 _RS04925 AMB_RS04930: AMB_RS04930 - PDZ domain-containing protein, at 1,023,148 to 1,025,334 _RS04930 AMB_RS23165: AMB_RS23165 - hypothetical protein, at 1,025,422 to 1,026,870 _RS23165 Position (kb) 1023 1024 1025 1026Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1022.372 kb on + strand, within AMB_RS04920at 1022.372 kb on + strand, within AMB_RS04920at 1022.372 kb on + strand, within AMB_RS04920at 1022.373 kb on - strand, within AMB_RS04920at 1022.373 kb on - strand, within AMB_RS04920at 1022.373 kb on - strand, within AMB_RS04920at 1022.486 kb on - strand, within AMB_RS04920at 1022.551 kb on - strand, within AMB_RS04920at 1022.551 kb on - strand, within AMB_RS04920at 1022.551 kb on - strand, within AMB_RS04920at 1022.551 kb on - strand, within AMB_RS04920at 1022.551 kb on - strand, within AMB_RS04920at 1022.551 kb on - strand, within AMB_RS04920at 1022.815 kb on + strandat 1022.816 kb on - strandat 1022.816 kb on - strandat 1022.816 kb on - strandat 1022.816 kb on - strandat 1022.816 kb on - strandat 1022.816 kb on - strandat 1022.817 kb on + strandat 1022.817 kb on + strandat 1022.818 kb on - strandat 1022.825 kb on + strandat 1022.825 kb on + strandat 1022.826 kb on - strandat 1022.826 kb on - strandat 1022.826 kb on - strandat 1022.826 kb on - strandat 1022.826 kb on - strandat 1022.826 kb on - strandat 1022.826 kb on - strandat 1022.826 kb on - strandat 1022.826 kb on - strandat 1022.826 kb on - strandat 1022.826 kb on - strandat 1022.842 kb on - strandat 1022.931 kb on + strandat 1022.931 kb on + strandat 1022.931 kb on + strandat 1022.932 kb on - strandat 1022.932 kb on - strandat 1022.932 kb on - strandat 1022.938 kb on + strandat 1022.938 kb on + strandat 1022.939 kb on - strandat 1022.939 kb on - strandat 1022.939 kb on - strandat 1022.939 kb on - strandat 1023.170 kb on + strandat 1023.170 kb on + strandat 1023.170 kb on + strandat 1023.170 kb on + strandat 1023.170 kb on + strandat 1023.170 kb on + strandat 1023.170 kb on + strandat 1023.170 kb on + strandat 1023.170 kb on + strandat 1023.170 kb on + strandat 1023.171 kb on - strandat 1023.171 kb on - strandat 1023.171 kb on - strandat 1023.171 kb on - strandat 1023.171 kb on - strandat 1023.171 kb on - strandat 1023.171 kb on - strandat 1023.171 kb on - strandat 1023.171 kb on - strandat 1023.171 kb on - strandat 1023.171 kb on - strandat 1023.171 kb on - strandat 1023.220 kb on + strandat 1023.220 kb on + strandat 1023.220 kb on + strandat 1023.221 kb on - strandat 1023.221 kb on - strandat 1023.221 kb on - strandat 1023.221 kb on - strandat 1023.221 kb on - strandat 1023.257 kb on + strandat 1023.257 kb on + strandat 1023.257 kb on + strandat 1023.257 kb on + strandat 1023.257 kb on + strandat 1023.258 kb on - strandat 1023.258 kb on - strandat 1023.447 kb on + strand, within AMB_RS04930at 1023.447 kb on + strand, within AMB_RS04930at 1023.447 kb on + strand, within AMB_RS04930at 1023.447 kb on + strand, within AMB_RS04930at 1023.447 kb on + strand, within AMB_RS04930at 1023.447 kb on + strand, within AMB_RS04930at 1023.447 kb on + strand, within AMB_RS04930at 1023.447 kb on + strand, within AMB_RS04930at 1023.448 kb on - strand, within AMB_RS04930at 1023.448 kb on - strand, within AMB_RS04930at 1023.448 kb on - strand, within AMB_RS04930at 1023.448 kb on - strand, within AMB_RS04930at 1023.448 kb on - strand, within AMB_RS04930at 1023.448 kb on - strand, within AMB_RS04930at 1023.448 kb on - strand, within AMB_RS04930at 1023.448 kb on - strand, within AMB_RS04930at 1023.448 kb on - strand, within AMB_RS04930at 1023.448 kb on - strand, within AMB_RS04930at 1023.448 kb on - strand, within AMB_RS04930at 1023.448 kb on - strand, within AMB_RS04930at 1023.449 kb on + strand, within AMB_RS04930at 1023.449 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.706 kb on + strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.707 kb on - strand, within AMB_RS04930at 1023.741 kb on + strand, within AMB_RS04930at 1023.773 kb on - strand, within AMB_RS04930at 1024.084 kb on - strand, within AMB_RS04930at 1024.093 kb on + strand, within AMB_RS04930at 1024.093 kb on + strand, within AMB_RS04930at 1024.093 kb on + strand, within AMB_RS04930at 1024.093 kb on + strand, within AMB_RS04930at 1024.093 kb on + strand, within AMB_RS04930at 1024.093 kb on + strand, within AMB_RS04930at 1024.093 kb on + strand, within AMB_RS04930at 1024.093 kb on + strand, within AMB_RS04930at 1024.093 kb on + strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.094 kb on - strand, within AMB_RS04930at 1024.121 kb on + strand, within AMB_RS04930at 1024.121 kb on + strand, within AMB_RS04930at 1024.121 kb on + strand, within AMB_RS04930at 1024.121 kb on + strand, within AMB_RS04930at 1024.121 kb on + strand, within AMB_RS04930at 1024.122 kb on - strand, within AMB_RS04930at 1024.122 kb on - strand, within AMB_RS04930at 1024.122 kb on - strand, within AMB_RS04930at 1024.122 kb on - strand, within AMB_RS04930at 1024.122 kb on - strand, within AMB_RS04930at 1024.122 kb on - strand, within AMB_RS04930at 1024.122 kb on - strand, within AMB_RS04930at 1024.122 kb on - strand, within AMB_RS04930at 1024.284 kb on + strand, within AMB_RS04930at 1024.284 kb on + strand, within AMB_RS04930at 1024.285 kb on - strand, within AMB_RS04930at 1024.566 kb on + strand, within AMB_RS04930at 1024.566 kb on + strand, within AMB_RS04930at 1024.566 kb on + strand, within AMB_RS04930at 1024.566 kb on + strand, within AMB_RS04930at 1024.566 kb on + strand, within AMB_RS04930at 1024.566 kb on + strand, within AMB_RS04930at 1024.566 kb on + strand, within AMB_RS04930at 1024.567 kb on - strand, within AMB_RS04930at 1024.567 kb on - strand, within AMB_RS04930at 1024.567 kb on - strand, within AMB_RS04930at 1024.567 kb on - strand, within AMB_RS04930at 1024.567 kb on - strand, within AMB_RS04930at 1024.567 kb on - strand, within AMB_RS04930at 1024.567 kb on - strand, within AMB_RS04930at 1024.677 kb on - strand, within AMB_RS04930at 1024.719 kb on + strand, within AMB_RS04930at 1024.719 kb on + strand, within AMB_RS04930at 1024.719 kb on + strand, within AMB_RS04930at 1024.719 kb on + strand, within AMB_RS04930at 1024.720 kb on - strand, within AMB_RS04930at 1024.720 kb on - strand, within AMB_RS04930at 1024.720 kb on - strand, within AMB_RS04930at 1024.720 kb on - strand, within AMB_RS04930at 1024.720 kb on - strand, within AMB_RS04930at 1025.214 kb on + strandat 1025.215 kb on - strandat 1025.215 kb on - strandat 1025.215 kb on - strandat 1025.215 kb on - strandat 1025.257 kb on - strandat 1025.358 kb on + strandat 1025.359 kb on - strandat 1025.508 kb on + strandat 1025.509 kb on - strandat 1025.509 kb on - strandat 1025.509 kb on - strandat 1025.509 kb on - strandat 1025.509 kb on - strandat 1025.742 kb on + strand, within AMB_RS23165

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_1
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1,022,372 + AMB_RS04920 0.58 +0.6
1,022,372 + AMB_RS04920 0.58 +0.1
1,022,372 + AMB_RS04920 0.58 +2.0
1,022,373 - AMB_RS04920 0.58 +0.9
1,022,373 - AMB_RS04920 0.58 +1.6
1,022,373 - AMB_RS04920 0.58 +0.9
1,022,486 - AMB_RS04920 0.67 +1.4
1,022,551 - AMB_RS04920 0.72 +2.9
1,022,551 - AMB_RS04920 0.72 +2.8
1,022,551 - AMB_RS04920 0.72 +3.0
1,022,551 - AMB_RS04920 0.72 +3.3
1,022,551 - AMB_RS04920 0.72 +2.9
1,022,551 - AMB_RS04920 0.72 +3.2
1,022,815 + +1.0
1,022,816 - +2.1
1,022,816 - +3.0
1,022,816 - +3.0
1,022,816 - +2.9
1,022,816 - +2.5
1,022,816 - +2.7
1,022,817 + +1.3
1,022,817 + +2.4
1,022,818 - +3.1
1,022,825 + +2.9
1,022,825 + +2.5
1,022,826 - +2.7
1,022,826 - +2.5
1,022,826 - +2.6
1,022,826 - +2.4
1,022,826 - +3.3
1,022,826 - +2.9
1,022,826 - +3.1
1,022,826 - +2.7
1,022,826 - +2.8
1,022,826 - +2.9
1,022,826 - +2.4
1,022,842 - +2.8
1,022,931 + +2.6
1,022,931 + +3.2
1,022,931 + +3.2
1,022,932 - +2.9
1,022,932 - +3.1
1,022,932 - +3.0
1,022,938 + +2.7
1,022,938 + +2.7
1,022,939 - +2.6
1,022,939 - +3.1
1,022,939 - +3.5
1,022,939 - +3.3
1,023,170 + +3.0
1,023,170 + +2.9
1,023,170 + +3.2
1,023,170 + +2.8
1,023,170 + +1.4
1,023,170 + +2.2
1,023,170 + +3.0
1,023,170 + +3.2
1,023,170 + +3.1
1,023,170 + -0.6
1,023,171 - +2.6
1,023,171 - +3.1
1,023,171 - +3.1
1,023,171 - +2.7
1,023,171 - +2.8
1,023,171 - +2.8
1,023,171 - +2.5
1,023,171 - +3.2
1,023,171 - +3.0
1,023,171 - +2.9
1,023,171 - +2.8
1,023,171 - +2.7
1,023,220 + +3.0
1,023,220 + +2.7
1,023,220 + +3.1
1,023,221 - +2.8
1,023,221 - +1.5
1,023,221 - +2.5
1,023,221 - +1.8
1,023,221 - +3.7
1,023,257 + +4.5
1,023,257 + +3.0
1,023,257 + +2.7
1,023,257 + +2.4
1,023,257 + +2.4
1,023,258 - +3.1
1,023,258 - +3.1
1,023,447 + AMB_RS04930 0.14 +3.3
1,023,447 + AMB_RS04930 0.14 +2.7
1,023,447 + AMB_RS04930 0.14 +2.1
1,023,447 + AMB_RS04930 0.14 +3.0
1,023,447 + AMB_RS04930 0.14 +2.4
1,023,447 + AMB_RS04930 0.14 +3.3
1,023,447 + AMB_RS04930 0.14 +2.6
1,023,447 + AMB_RS04930 0.14 +3.0
1,023,448 - AMB_RS04930 0.14 +3.0
1,023,448 - AMB_RS04930 0.14 +3.1
1,023,448 - AMB_RS04930 0.14 +2.8
1,023,448 - AMB_RS04930 0.14 +2.9
1,023,448 - AMB_RS04930 0.14 +2.8
1,023,448 - AMB_RS04930 0.14 +2.7
1,023,448 - AMB_RS04930 0.14 +3.4
1,023,448 - AMB_RS04930 0.14 +3.4
1,023,448 - AMB_RS04930 0.14 +3.7
1,023,448 - AMB_RS04930 0.14 +3.0
1,023,448 - AMB_RS04930 0.14 +4.0
1,023,448 - AMB_RS04930 0.14 +1.1
1,023,449 + AMB_RS04930 0.14 +2.1
1,023,449 + AMB_RS04930 0.14 +3.6
1,023,706 + AMB_RS04930 0.26 +3.1
1,023,706 + AMB_RS04930 0.26 +1.6
1,023,706 + AMB_RS04930 0.26 +2.5
1,023,706 + AMB_RS04930 0.26 +3.9
1,023,706 + AMB_RS04930 0.26 +3.6
1,023,706 + AMB_RS04930 0.26 +2.8
1,023,706 + AMB_RS04930 0.26 +2.9
1,023,706 + AMB_RS04930 0.26 +4.9
1,023,706 + AMB_RS04930 0.26 +3.0
1,023,706 + AMB_RS04930 0.26 +2.6
1,023,706 + AMB_RS04930 0.26 +3.4
1,023,706 + AMB_RS04930 0.26 +2.9
1,023,706 + AMB_RS04930 0.26 +3.4
1,023,706 + AMB_RS04930 0.26 +3.5
1,023,706 + AMB_RS04930 0.26 +3.1
1,023,706 + AMB_RS04930 0.26 +3.5
1,023,706 + AMB_RS04930 0.26 +3.0
1,023,706 + AMB_RS04930 0.26 +3.0
1,023,706 + AMB_RS04930 0.26 +2.9
1,023,706 + AMB_RS04930 0.26 +3.0
1,023,706 + AMB_RS04930 0.26 +2.7
1,023,706 + AMB_RS04930 0.26 +2.7
1,023,706 + AMB_RS04930 0.26 +3.0
1,023,707 - AMB_RS04930 0.26 +3.1
1,023,707 - AMB_RS04930 0.26 +3.3
1,023,707 - AMB_RS04930 0.26 +3.1
1,023,707 - AMB_RS04930 0.26 +3.2
1,023,707 - AMB_RS04930 0.26 +2.8
1,023,707 - AMB_RS04930 0.26 +3.1
1,023,707 - AMB_RS04930 0.26 +3.1
1,023,707 - AMB_RS04930 0.26 +2.4
1,023,707 - AMB_RS04930 0.26 +3.5
1,023,707 - AMB_RS04930 0.26 +2.3
1,023,707 - AMB_RS04930 0.26 +3.0
1,023,707 - AMB_RS04930 0.26 +2.8
1,023,707 - AMB_RS04930 0.26 +2.8
1,023,707 - AMB_RS04930 0.26 +3.0
1,023,707 - AMB_RS04930 0.26 +2.5
1,023,707 - AMB_RS04930 0.26 +3.0
1,023,707 - AMB_RS04930 0.26 +3.1
1,023,707 - AMB_RS04930 0.26 +2.3
1,023,707 - AMB_RS04930 0.26 +3.2
1,023,707 - AMB_RS04930 0.26 +2.6
1,023,707 - AMB_RS04930 0.26 +2.8
1,023,707 - AMB_RS04930 0.26 +2.7
1,023,707 - AMB_RS04930 0.26 +2.9
1,023,707 - AMB_RS04930 0.26 +3.6
1,023,707 - AMB_RS04930 0.26 +2.9
1,023,741 + AMB_RS04930 0.27 +3.3
1,023,773 - AMB_RS04930 0.29 +3.0
1,024,084 - AMB_RS04930 0.43 +3.9
1,024,093 + AMB_RS04930 0.43 +4.1
1,024,093 + AMB_RS04930 0.43 +3.1
1,024,093 + AMB_RS04930 0.43 +2.1
1,024,093 + AMB_RS04930 0.43 +3.0
1,024,093 + AMB_RS04930 0.43 +2.3
1,024,093 + AMB_RS04930 0.43 +3.0
1,024,093 + AMB_RS04930 0.43 +2.9
1,024,093 + AMB_RS04930 0.43 +4.0
1,024,093 + AMB_RS04930 0.43 +1.6
1,024,094 - AMB_RS04930 0.43 +2.2
1,024,094 - AMB_RS04930 0.43 +2.8
1,024,094 - AMB_RS04930 0.43 +2.8
1,024,094 - AMB_RS04930 0.43 +3.1
1,024,094 - AMB_RS04930 0.43 +0.4
1,024,094 - AMB_RS04930 0.43 +3.0
1,024,094 - AMB_RS04930 0.43 +3.0
1,024,094 - AMB_RS04930 0.43 +2.5
1,024,094 - AMB_RS04930 0.43 +2.8
1,024,094 - AMB_RS04930 0.43 +3.1
1,024,094 - AMB_RS04930 0.43 +3.1
1,024,094 - AMB_RS04930 0.43 +3.5
1,024,094 - AMB_RS04930 0.43 +0.4
1,024,094 - AMB_RS04930 0.43 +3.0
1,024,094 - AMB_RS04930 0.43 +3.1
1,024,094 - AMB_RS04930 0.43 +3.3
1,024,094 - AMB_RS04930 0.43 +3.2
1,024,094 - AMB_RS04930 0.43 +2.9
1,024,094 - AMB_RS04930 0.43 +2.9
1,024,121 + AMB_RS04930 0.44 +3.1
1,024,121 + AMB_RS04930 0.44 +3.2
1,024,121 + AMB_RS04930 0.44 +3.2
1,024,121 + AMB_RS04930 0.44 +3.0
1,024,121 + AMB_RS04930 0.44 +4.9
1,024,122 - AMB_RS04930 0.45 +3.0
1,024,122 - AMB_RS04930 0.45 +3.4
1,024,122 - AMB_RS04930 0.45 +3.1
1,024,122 - AMB_RS04930 0.45 +2.5
1,024,122 - AMB_RS04930 0.45 +2.8
1,024,122 - AMB_RS04930 0.45 +3.4
1,024,122 - AMB_RS04930 0.45 +3.2
1,024,122 - AMB_RS04930 0.45 +2.8
1,024,284 + AMB_RS04930 0.52 +3.0
1,024,284 + AMB_RS04930 0.52 +3.3
1,024,285 - AMB_RS04930 0.52 +3.5
1,024,566 + AMB_RS04930 0.65 +3.4
1,024,566 + AMB_RS04930 0.65 +2.8
1,024,566 + AMB_RS04930 0.65 +2.7
1,024,566 + AMB_RS04930 0.65 +3.1
1,024,566 + AMB_RS04930 0.65 +2.0
1,024,566 + AMB_RS04930 0.65 +3.4
1,024,566 + AMB_RS04930 0.65 +2.2
1,024,567 - AMB_RS04930 0.65 +3.1
1,024,567 - AMB_RS04930 0.65 +3.3
1,024,567 - AMB_RS04930 0.65 +3.2
1,024,567 - AMB_RS04930 0.65 +2.9
1,024,567 - AMB_RS04930 0.65 +2.8
1,024,567 - AMB_RS04930 0.65 +2.6
1,024,567 - AMB_RS04930 0.65 +3.3
1,024,677 - AMB_RS04930 0.70 +2.9
1,024,719 + AMB_RS04930 0.72 +2.6
1,024,719 + AMB_RS04930 0.72 +2.8
1,024,719 + AMB_RS04930 0.72 +2.7
1,024,719 + AMB_RS04930 0.72 +2.4
1,024,720 - AMB_RS04930 0.72 +2.5
1,024,720 - AMB_RS04930 0.72 +3.3
1,024,720 - AMB_RS04930 0.72 +2.4
1,024,720 - AMB_RS04930 0.72 +3.2
1,024,720 - AMB_RS04930 0.72 +3.2
1,025,214 + +3.3
1,025,215 - +3.6
1,025,215 - +3.0
1,025,215 - +3.1
1,025,215 - +2.9
1,025,257 - +2.1
1,025,358 + +3.3
1,025,359 - +2.7
1,025,508 + +1.6
1,025,509 - +2.6
1,025,509 - +2.1
1,025,509 - +1.6
1,025,509 - +3.1
1,025,509 - +3.1
1,025,742 + AMB_RS23165 0.22 +3.1

Or see this region's nucleotide sequence