Experiment: 30_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04350 and AMB_RS04355 are separated by 188 nucleotides AMB_RS04355 and AMB_RS04360 are separated by 4 nucleotides AMB_RS04360 and AMB_RS04365 are separated by 211 nucleotides
AMB_RS04350: AMB_RS04350 - HAMP domain-containing protein, at 913,645 to 915,693
_RS04350
AMB_RS04355: AMB_RS04355 - thiosulfate oxidation carrier complex protein SoxZ, at 915,882 to 916,211
_RS04355
AMB_RS04360: AMB_RS04360 - thiosulfate oxidation carrier protein SoxY, at 916,216 to 916,545
_RS04360
AMB_RS04365: AMB_RS04365 - YeeE/YedE family protein, at 916,757 to 917,887
_RS04365
Position (kb) 916
917 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 915.254 kb on + strand, within AMB_RS04350 at 915.254 kb on + strand, within AMB_RS04350 at 915.254 kb on + strand, within AMB_RS04350 at 915.254 kb on + strand, within AMB_RS04350 at 915.255 kb on - strand, within AMB_RS04350 at 915.255 kb on - strand, within AMB_RS04350 at 915.255 kb on - strand, within AMB_RS04350 at 915.257 kb on + strand, within AMB_RS04350 at 915.257 kb on + strand, within AMB_RS04350 at 915.258 kb on - strand, within AMB_RS04350 at 915.621 kb on - strand at 915.621 kb on - strand at 915.738 kb on + strand at 915.738 kb on + strand at 915.739 kb on - strand at 915.794 kb on + strand at 915.794 kb on + strand at 915.794 kb on + strand at 915.794 kb on + strand at 915.794 kb on + strand at 915.795 kb on - strand at 915.796 kb on + strand at 915.797 kb on - strand at 915.825 kb on - strand at 915.883 kb on + strand at 915.906 kb on - strand at 915.907 kb on + strand at 915.907 kb on + strand at 915.908 kb on - strand at 916.367 kb on + strand, within AMB_RS04360 at 916.368 kb on - strand, within AMB_RS04360 at 916.737 kb on - strand at 917.087 kb on - strand, within AMB_RS04365 at 917.088 kb on + strand, within AMB_RS04365 at 917.088 kb on + strand, within AMB_RS04365 at 917.088 kb on + strand, within AMB_RS04365 at 917.088 kb on + strand, within AMB_RS04365 at 917.088 kb on + strand, within AMB_RS04365 at 917.088 kb on + strand, within AMB_RS04365 at 917.089 kb on - strand, within AMB_RS04365 at 917.089 kb on - strand, within AMB_RS04365 at 917.089 kb on - strand, within AMB_RS04365 at 917.089 kb on - strand, within AMB_RS04365 at 917.239 kb on + strand, within AMB_RS04365 at 917.239 kb on + strand, within AMB_RS04365
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_1 remove 915,254 + AMB_RS04350 0.79 +0.0 915,254 + AMB_RS04350 0.79 -0.7 915,254 + AMB_RS04350 0.79 +0.4 915,254 + AMB_RS04350 0.79 +0.3 915,255 - AMB_RS04350 0.79 +0.0 915,255 - AMB_RS04350 0.79 -0.5 915,255 - AMB_RS04350 0.79 -0.2 915,257 + AMB_RS04350 0.79 -0.3 915,257 + AMB_RS04350 0.79 -0.9 915,258 - AMB_RS04350 0.79 -0.8 915,621 - -0.3 915,621 - -0.1 915,738 + -0.8 915,738 + -0.4 915,739 - +0.4 915,794 + -1.2 915,794 + -0.1 915,794 + -0.0 915,794 + +0.4 915,794 + -0.6 915,795 - -0.6 915,796 + +1.0 915,797 - +0.0 915,825 - -1.7 915,883 + -1.4 915,906 - -1.0 915,907 + +0.2 915,907 + -0.9 915,908 - -0.2 916,367 + AMB_RS04360 0.46 -1.8 916,368 - AMB_RS04360 0.46 -0.7 916,737 - +0.4 917,087 - AMB_RS04365 0.29 -0.3 917,088 + AMB_RS04365 0.29 +0.6 917,088 + AMB_RS04365 0.29 +0.5 917,088 + AMB_RS04365 0.29 -0.8 917,088 + AMB_RS04365 0.29 +0.4 917,088 + AMB_RS04365 0.29 +0.6 917,088 + AMB_RS04365 0.29 +0.9 917,089 - AMB_RS04365 0.29 +1.5 917,089 - AMB_RS04365 0.29 -1.2 917,089 - AMB_RS04365 0.29 +2.0 917,089 - AMB_RS04365 0.29 +0.8 917,239 + AMB_RS04365 0.43 -0.2 917,239 + AMB_RS04365 0.43 -2.9
Or see this region's nucleotide sequence