Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04260

Experiment: 30_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04255 and AMB_RS04260 are separated by 4 nucleotidesAMB_RS04260 and AMB_RS04265 are separated by 4 nucleotidesAMB_RS04265 and AMB_RS04270 are separated by 79 nucleotides AMB_RS04255: AMB_RS04255 - isoleucine--tRNA ligase, at 892,564 to 895,409 _RS04255 AMB_RS04260: AMB_RS04260 - signal peptidase II, at 895,414 to 895,932 _RS04260 AMB_RS04265: AMB_RS04265 - DUF3035 domain-containing protein, at 895,937 to 896,524 _RS04265 AMB_RS04270: AMB_RS04270 - insulinase family protein, at 896,604 to 898,001 _RS04270 Position (kb) 895 896Strain fitness (log2 ratio) -1 0 1at 895.923 kb on + strandat 895.930 kb on + strandat 896.523 kb on - strandat 896.600 kb on + strandat 896.601 kb on - strandat 896.769 kb on + strand, within AMB_RS04270

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_1
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895,923 + -1.2
895,930 + -1.2
896,523 - -0.1
896,600 + +0.0
896,601 - +0.5
896,769 + AMB_RS04270 0.12 +1.0

Or see this region's nucleotide sequence