Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03725

Experiment: 30_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03715 and AMB_RS03720 are separated by 57 nucleotidesAMB_RS03720 and AMB_RS03725 are separated by 262 nucleotidesAMB_RS03725 and AMB_RS03730 are separated by 68 nucleotides AMB_RS03715: AMB_RS03715 - hemerythrin, at 784,331 to 785,158 _RS03715 AMB_RS03720: AMB_RS03720 - hypothetical protein, at 785,216 to 785,773 _RS03720 AMB_RS03725: AMB_RS03725 - DNA helicase II, at 786,036 to 788,321 _RS03725 AMB_RS03730: AMB_RS03730 - 50S ribosomal protein L11 methyltransferase, at 788,390 to 789,289 _RS03730 Position (kb) 786 787 788 789Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 785.193 kb on + strandat 785.193 kb on + strandat 785.193 kb on + strandat 785.193 kb on + strandat 785.193 kb on + strandat 785.198 kb on + strandat 785.199 kb on - strandat 785.199 kb on - strandat 785.199 kb on - strandat 785.217 kb on + strandat 785.217 kb on + strandat 785.217 kb on + strandat 785.218 kb on - strandat 785.218 kb on - strandat 785.218 kb on - strandat 785.218 kb on - strandat 785.218 kb on - strandat 785.218 kb on - strandat 785.221 kb on - strandat 785.221 kb on - strandat 785.221 kb on - strandat 785.221 kb on - strandat 785.221 kb on - strandat 785.302 kb on - strand, within AMB_RS03720at 785.340 kb on + strand, within AMB_RS03720at 785.341 kb on - strand, within AMB_RS03720at 785.341 kb on - strand, within AMB_RS03720at 785.341 kb on - strand, within AMB_RS03720at 785.343 kb on + strand, within AMB_RS03720at 785.343 kb on + strand, within AMB_RS03720at 785.343 kb on + strand, within AMB_RS03720at 785.466 kb on + strand, within AMB_RS03720at 785.466 kb on + strand, within AMB_RS03720at 785.466 kb on + strand, within AMB_RS03720at 785.466 kb on + strand, within AMB_RS03720at 785.466 kb on + strand, within AMB_RS03720at 785.467 kb on - strand, within AMB_RS03720at 785.467 kb on - strand, within AMB_RS03720at 785.467 kb on - strand, within AMB_RS03720at 785.467 kb on - strand, within AMB_RS03720at 785.467 kb on - strand, within AMB_RS03720at 785.467 kb on - strand, within AMB_RS03720at 785.467 kb on - strand, within AMB_RS03720at 785.521 kb on + strand, within AMB_RS03720at 785.523 kb on + strand, within AMB_RS03720at 785.523 kb on + strand, within AMB_RS03720at 785.523 kb on + strand, within AMB_RS03720at 785.524 kb on - strand, within AMB_RS03720at 785.524 kb on - strand, within AMB_RS03720at 785.524 kb on - strand, within AMB_RS03720at 785.524 kb on - strand, within AMB_RS03720at 785.524 kb on - strand, within AMB_RS03720at 785.791 kb on - strandat 785.809 kb on + strandat 785.809 kb on + strandat 785.809 kb on + strandat 785.809 kb on + strandat 785.810 kb on - strandat 785.810 kb on - strandat 785.810 kb on - strandat 785.879 kb on + strandat 785.880 kb on - strandat 785.880 kb on - strandat 785.880 kb on - strandat 785.914 kb on + strandat 785.915 kb on - strandat 786.639 kb on + strand, within AMB_RS03725at 786.757 kb on - strand, within AMB_RS03725at 786.775 kb on - strand, within AMB_RS03725at 786.775 kb on - strand, within AMB_RS03725at 786.799 kb on - strand, within AMB_RS03725at 786.870 kb on + strand, within AMB_RS03725at 786.870 kb on + strand, within AMB_RS03725at 786.957 kb on + strand, within AMB_RS03725at 786.957 kb on + strand, within AMB_RS03725at 786.974 kb on + strand, within AMB_RS03725at 787.270 kb on - strand, within AMB_RS03725at 787.303 kb on - strand, within AMB_RS03725at 787.359 kb on - strand, within AMB_RS03725at 787.678 kb on - strand, within AMB_RS03725at 787.896 kb on + strand, within AMB_RS03725at 787.896 kb on + strand, within AMB_RS03725at 787.896 kb on + strand, within AMB_RS03725at 787.897 kb on - strand, within AMB_RS03725at 787.959 kb on + strand, within AMB_RS03725at 787.959 kb on + strand, within AMB_RS03725at 787.959 kb on + strand, within AMB_RS03725at 787.960 kb on - strand, within AMB_RS03725at 788.320 kb on - strandat 788.818 kb on + strand, within AMB_RS03730at 788.819 kb on - strand, within AMB_RS03730at 788.819 kb on - strand, within AMB_RS03730at 789.077 kb on + strand, within AMB_RS03730at 789.077 kb on + strand, within AMB_RS03730at 789.077 kb on + strand, within AMB_RS03730at 789.078 kb on - strand, within AMB_RS03730at 789.078 kb on - strand, within AMB_RS03730at 789.306 kb on + strandat 789.307 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_1
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785,193 + +0.9
785,193 + -1.2
785,193 + -1.1
785,193 + +0.4
785,193 + -2.4
785,198 + +0.0
785,199 - -0.8
785,199 - -0.0
785,199 - -0.1
785,217 + +0.3
785,217 + +0.1
785,217 + +0.0
785,218 - -0.3
785,218 - -0.2
785,218 - -0.4
785,218 - -0.3
785,218 - -0.2
785,218 - -0.6
785,221 - -1.7
785,221 - +0.3
785,221 - +0.6
785,221 - -1.5
785,221 - -0.1
785,302 - AMB_RS03720 0.15 +0.8
785,340 + AMB_RS03720 0.22 -0.0
785,341 - AMB_RS03720 0.22 -0.1
785,341 - AMB_RS03720 0.22 +0.5
785,341 - AMB_RS03720 0.22 -1.0
785,343 + AMB_RS03720 0.23 -0.6
785,343 + AMB_RS03720 0.23 +0.7
785,343 + AMB_RS03720 0.23 -0.1
785,466 + AMB_RS03720 0.45 -1.3
785,466 + AMB_RS03720 0.45 -0.7
785,466 + AMB_RS03720 0.45 +0.4
785,466 + AMB_RS03720 0.45 +0.4
785,466 + AMB_RS03720 0.45 -0.3
785,467 - AMB_RS03720 0.45 -0.5
785,467 - AMB_RS03720 0.45 -1.8
785,467 - AMB_RS03720 0.45 -0.1
785,467 - AMB_RS03720 0.45 +0.4
785,467 - AMB_RS03720 0.45 +0.1
785,467 - AMB_RS03720 0.45 -0.7
785,467 - AMB_RS03720 0.45 -1.5
785,521 + AMB_RS03720 0.55 -0.2
785,523 + AMB_RS03720 0.55 +0.7
785,523 + AMB_RS03720 0.55 -0.8
785,523 + AMB_RS03720 0.55 -0.2
785,524 - AMB_RS03720 0.55 -0.3
785,524 - AMB_RS03720 0.55 +0.1
785,524 - AMB_RS03720 0.55 -1.2
785,524 - AMB_RS03720 0.55 -0.2
785,524 - AMB_RS03720 0.55 +1.1
785,791 - -0.2
785,809 + -0.1
785,809 + +0.1
785,809 + -0.6
785,809 + -0.6
785,810 - +0.1
785,810 - +1.0
785,810 - -1.6
785,879 + +0.2
785,880 - -0.1
785,880 - -0.1
785,880 - -2.5
785,914 + -0.1
785,915 - -1.1
786,639 + AMB_RS03725 0.26 +0.4
786,757 - AMB_RS03725 0.32 -0.2
786,775 - AMB_RS03725 0.32 -0.3
786,775 - AMB_RS03725 0.32 -0.7
786,799 - AMB_RS03725 0.33 -1.7
786,870 + AMB_RS03725 0.36 -1.4
786,870 + AMB_RS03725 0.36 +0.4
786,957 + AMB_RS03725 0.40 -1.2
786,957 + AMB_RS03725 0.40 -2.2
786,974 + AMB_RS03725 0.41 +0.2
787,270 - AMB_RS03725 0.54 +0.4
787,303 - AMB_RS03725 0.55 -1.4
787,359 - AMB_RS03725 0.58 -0.4
787,678 - AMB_RS03725 0.72 -0.4
787,896 + AMB_RS03725 0.81 +0.4
787,896 + AMB_RS03725 0.81 -4.2
787,896 + AMB_RS03725 0.81 -0.6
787,897 - AMB_RS03725 0.81 -1.4
787,959 + AMB_RS03725 0.84 -0.9
787,959 + AMB_RS03725 0.84 -0.6
787,959 + AMB_RS03725 0.84 -1.2
787,960 - AMB_RS03725 0.84 -0.4
788,320 - +0.1
788,818 + AMB_RS03730 0.48 -0.7
788,819 - AMB_RS03730 0.48 -0.5
788,819 - AMB_RS03730 0.48 -0.5
789,077 + AMB_RS03730 0.76 -0.8
789,077 + AMB_RS03730 0.76 -0.9
789,077 + AMB_RS03730 0.76 -0.1
789,078 - AMB_RS03730 0.76 -1.2
789,078 - AMB_RS03730 0.76 +0.6
789,306 + -0.4
789,307 - +0.4

Or see this region's nucleotide sequence