Experiment: 30_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03650 and AMB_RS03655 are separated by 65 nucleotides AMB_RS03655 and AMB_RS03660 are separated by 134 nucleotides
AMB_RS03650: AMB_RS03650 - elongation factor G, at 770,335 to 772,362
_RS03650
AMB_RS03655: AMB_RS03655 - hypothetical protein, at 772,428 to 772,700
_RS03655
AMB_RS03660: AMB_RS03660 - pseudaminic acid synthase, at 772,835 to 773,881
_RS03660
Position (kb) 772
773 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 771.706 kb on + strand, within AMB_RS03650 at 771.706 kb on + strand, within AMB_RS03650 at 771.706 kb on + strand, within AMB_RS03650 at 771.706 kb on + strand, within AMB_RS03650 at 771.706 kb on + strand, within AMB_RS03650 at 771.707 kb on - strand, within AMB_RS03650 at 771.707 kb on - strand, within AMB_RS03650 at 771.871 kb on + strand, within AMB_RS03650 at 771.871 kb on + strand, within AMB_RS03650 at 771.872 kb on - strand, within AMB_RS03650 at 771.872 kb on - strand, within AMB_RS03650 at 771.970 kb on + strand, within AMB_RS03650 at 771.970 kb on + strand, within AMB_RS03650 at 771.970 kb on + strand, within AMB_RS03650 at 771.970 kb on + strand, within AMB_RS03650 at 771.971 kb on - strand, within AMB_RS03650 at 771.971 kb on - strand, within AMB_RS03650 at 771.971 kb on - strand, within AMB_RS03650 at 772.201 kb on + strand at 772.202 kb on - strand at 772.390 kb on + strand at 772.390 kb on + strand at 772.391 kb on - strand at 772.391 kb on - strand at 772.392 kb on + strand at 772.392 kb on + strand at 772.392 kb on + strand at 772.393 kb on - strand at 772.393 kb on - strand at 772.393 kb on - strand at 772.571 kb on + strand, within AMB_RS03655 at 772.571 kb on + strand, within AMB_RS03655 at 772.571 kb on + strand, within AMB_RS03655 at 772.572 kb on - strand, within AMB_RS03655 at 772.572 kb on - strand, within AMB_RS03655 at 772.572 kb on - strand, within AMB_RS03655 at 772.572 kb on - strand, within AMB_RS03655 at 772.614 kb on + strand, within AMB_RS03655 at 772.614 kb on + strand, within AMB_RS03655 at 772.614 kb on + strand, within AMB_RS03655 at 772.615 kb on - strand, within AMB_RS03655 at 772.630 kb on - strand, within AMB_RS03655 at 772.706 kb on + strand at 772.836 kb on + strand at 772.836 kb on + strand at 772.836 kb on + strand at 772.837 kb on - strand at 772.933 kb on - strand at 773.001 kb on + strand, within AMB_RS03660 at 773.001 kb on + strand, within AMB_RS03660 at 773.001 kb on + strand, within AMB_RS03660 at 773.001 kb on + strand, within AMB_RS03660 at 773.001 kb on + strand, within AMB_RS03660 at 773.001 kb on + strand, within AMB_RS03660 at 773.001 kb on + strand, within AMB_RS03660 at 773.001 kb on + strand, within AMB_RS03660 at 773.001 kb on + strand, within AMB_RS03660 at 773.002 kb on - strand, within AMB_RS03660 at 773.002 kb on - strand, within AMB_RS03660 at 773.002 kb on - strand, within AMB_RS03660 at 773.002 kb on - strand, within AMB_RS03660 at 773.002 kb on - strand, within AMB_RS03660 at 773.002 kb on - strand, within AMB_RS03660 at 773.002 kb on - strand, within AMB_RS03660 at 773.052 kb on + strand, within AMB_RS03660 at 773.052 kb on + strand, within AMB_RS03660 at 773.052 kb on + strand, within AMB_RS03660 at 773.052 kb on + strand, within AMB_RS03660 at 773.053 kb on - strand, within AMB_RS03660 at 773.053 kb on - strand, within AMB_RS03660 at 773.053 kb on - strand, within AMB_RS03660 at 773.631 kb on + strand, within AMB_RS03660 at 773.631 kb on + strand, within AMB_RS03660 at 773.631 kb on + strand, within AMB_RS03660 at 773.640 kb on + strand, within AMB_RS03660 at 773.640 kb on + strand, within AMB_RS03660 at 773.640 kb on + strand, within AMB_RS03660 at 773.640 kb on + strand, within AMB_RS03660 at 773.640 kb on + strand, within AMB_RS03660 at 773.640 kb on + strand, within AMB_RS03660 at 773.640 kb on + strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_1 remove 771,706 + AMB_RS03650 0.68 -0.2 771,706 + AMB_RS03650 0.68 -0.8 771,706 + AMB_RS03650 0.68 +0.2 771,706 + AMB_RS03650 0.68 -0.2 771,706 + AMB_RS03650 0.68 -0.4 771,707 - AMB_RS03650 0.68 -0.3 771,707 - AMB_RS03650 0.68 +0.1 771,871 + AMB_RS03650 0.76 -0.9 771,871 + AMB_RS03650 0.76 +0.4 771,872 - AMB_RS03650 0.76 +0.3 771,872 - AMB_RS03650 0.76 -0.3 771,970 + AMB_RS03650 0.81 -0.3 771,970 + AMB_RS03650 0.81 +0.5 771,970 + AMB_RS03650 0.81 +1.3 771,970 + AMB_RS03650 0.81 -0.6 771,971 - AMB_RS03650 0.81 -0.2 771,971 - AMB_RS03650 0.81 -0.5 771,971 - AMB_RS03650 0.81 -0.6 772,201 + +0.3 772,202 - -1.3 772,390 + -1.6 772,390 + +1.3 772,391 - -3.3 772,391 - -0.8 772,392 + -0.2 772,392 + -1.2 772,392 + -1.5 772,393 - -3.8 772,393 - +0.9 772,393 - -0.8 772,571 + AMB_RS03655 0.52 -2.4 772,571 + AMB_RS03655 0.52 -0.8 772,571 + AMB_RS03655 0.52 -0.4 772,572 - AMB_RS03655 0.53 -2.2 772,572 - AMB_RS03655 0.53 -0.9 772,572 - AMB_RS03655 0.53 -0.0 772,572 - AMB_RS03655 0.53 -1.6 772,614 + AMB_RS03655 0.68 -1.8 772,614 + AMB_RS03655 0.68 +0.7 772,614 + AMB_RS03655 0.68 -1.2 772,615 - AMB_RS03655 0.68 -1.5 772,630 - AMB_RS03655 0.74 -0.9 772,706 + -0.8 772,836 + -0.4 772,836 + -0.3 772,836 + -0.7 772,837 - +0.0 772,933 - -1.9 773,001 + AMB_RS03660 0.16 +0.4 773,001 + AMB_RS03660 0.16 -1.8 773,001 + AMB_RS03660 0.16 +0.6 773,001 + AMB_RS03660 0.16 -0.2 773,001 + AMB_RS03660 0.16 -0.1 773,001 + AMB_RS03660 0.16 -1.3 773,001 + AMB_RS03660 0.16 +0.0 773,001 + AMB_RS03660 0.16 +0.1 773,001 + AMB_RS03660 0.16 +0.3 773,002 - AMB_RS03660 0.16 -0.5 773,002 - AMB_RS03660 0.16 -1.9 773,002 - AMB_RS03660 0.16 -0.4 773,002 - AMB_RS03660 0.16 +0.2 773,002 - AMB_RS03660 0.16 -0.6 773,002 - AMB_RS03660 0.16 -0.8 773,002 - AMB_RS03660 0.16 -0.2 773,052 + AMB_RS03660 0.21 -1.8 773,052 + AMB_RS03660 0.21 -0.0 773,052 + AMB_RS03660 0.21 -0.8 773,052 + AMB_RS03660 0.21 -0.2 773,053 - AMB_RS03660 0.21 +0.2 773,053 - AMB_RS03660 0.21 -0.4 773,053 - AMB_RS03660 0.21 -1.9 773,631 + AMB_RS03660 0.76 -0.4 773,631 + AMB_RS03660 0.76 -0.3 773,631 + AMB_RS03660 0.76 -0.0 773,640 + AMB_RS03660 0.77 -0.2 773,640 + AMB_RS03660 0.77 -0.3 773,640 + AMB_RS03660 0.77 -0.0 773,640 + AMB_RS03660 0.77 -1.0 773,640 + AMB_RS03660 0.77 -1.7 773,640 + AMB_RS03660 0.77 +0.1 773,640 + AMB_RS03660 0.77 +0.1 773,641 - AMB_RS03660 0.77 -0.3 773,641 - AMB_RS03660 0.77 -1.9 773,641 - AMB_RS03660 0.77 +1.9 773,641 - AMB_RS03660 0.77 -0.3 773,641 - AMB_RS03660 0.77 -0.4 773,641 - AMB_RS03660 0.77 -0.5 773,641 - AMB_RS03660 0.77 +0.1 773,641 - AMB_RS03660 0.77 -1.3 773,641 - AMB_RS03660 0.77 -0.1 773,641 - AMB_RS03660 0.77 -0.0
Or see this region's nucleotide sequence