Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03480

Experiment: 30_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03475 and AMB_RS03480 are separated by 153 nucleotidesAMB_RS03480 and AMB_RS03485 are separated by 72 nucleotides AMB_RS03475: AMB_RS03475 - methylcrotonoyl-CoA carboxylase, at 726,215 to 727,822 _RS03475 AMB_RS03480: AMB_RS03480 - isovaleryl-CoA dehydrogenase, at 727,976 to 729,145 _RS03480 AMB_RS03485: AMB_RS03485 - AEC family transporter, at 729,218 to 730,156 _RS03485 Position (kb) 727 728 729 730Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 727.080 kb on + strand, within AMB_RS03475at 727.080 kb on + strand, within AMB_RS03475at 727.240 kb on + strand, within AMB_RS03475at 727.242 kb on + strand, within AMB_RS03475at 727.242 kb on + strand, within AMB_RS03475at 727.242 kb on + strand, within AMB_RS03475at 727.243 kb on - strand, within AMB_RS03475at 727.243 kb on - strand, within AMB_RS03475at 727.320 kb on + strand, within AMB_RS03475at 727.320 kb on + strand, within AMB_RS03475at 727.320 kb on + strand, within AMB_RS03475at 727.320 kb on + strand, within AMB_RS03475at 727.321 kb on - strand, within AMB_RS03475at 727.321 kb on - strand, within AMB_RS03475at 727.321 kb on - strand, within AMB_RS03475at 727.401 kb on + strand, within AMB_RS03475at 727.402 kb on - strand, within AMB_RS03475at 727.402 kb on - strand, within AMB_RS03475at 727.402 kb on - strand, within AMB_RS03475at 727.470 kb on + strand, within AMB_RS03475at 727.471 kb on - strand, within AMB_RS03475at 727.473 kb on + strand, within AMB_RS03475at 727.473 kb on + strand, within AMB_RS03475at 727.473 kb on + strand, within AMB_RS03475at 727.473 kb on + strand, within AMB_RS03475at 727.473 kb on + strand, within AMB_RS03475at 727.473 kb on + strand, within AMB_RS03475at 727.473 kb on + strand, within AMB_RS03475at 727.474 kb on - strand, within AMB_RS03475at 727.474 kb on - strand, within AMB_RS03475at 727.474 kb on - strand, within AMB_RS03475at 727.474 kb on - strand, within AMB_RS03475at 727.474 kb on - strand, within AMB_RS03475at 727.474 kb on - strand, within AMB_RS03475at 727.474 kb on - strand, within AMB_RS03475at 727.474 kb on - strand, within AMB_RS03475at 727.474 kb on - strand, within AMB_RS03475at 727.578 kb on + strand, within AMB_RS03475at 727.578 kb on + strand, within AMB_RS03475at 727.578 kb on + strand, within AMB_RS03475at 727.578 kb on + strand, within AMB_RS03475at 727.578 kb on + strand, within AMB_RS03475at 727.578 kb on + strand, within AMB_RS03475at 727.578 kb on + strand, within AMB_RS03475at 727.578 kb on + strand, within AMB_RS03475at 727.579 kb on - strand, within AMB_RS03475at 727.579 kb on - strand, within AMB_RS03475at 727.579 kb on - strand, within AMB_RS03475at 727.579 kb on - strand, within AMB_RS03475at 727.579 kb on - strand, within AMB_RS03475at 727.579 kb on - strand, within AMB_RS03475at 727.896 kb on + strandat 727.977 kb on + strandat 727.977 kb on + strandat 727.978 kb on - strandat 727.978 kb on - strandat 727.978 kb on - strandat 727.978 kb on - strandat 727.978 kb on - strandat 727.978 kb on - strandat 727.978 kb on - strandat 727.978 kb on - strandat 728.049 kb on + strandat 728.049 kb on + strandat 728.049 kb on + strandat 728.050 kb on - strandat 728.050 kb on - strandat 728.050 kb on - strandat 728.085 kb on + strandat 728.086 kb on - strandat 728.095 kb on + strand, within AMB_RS03480at 728.095 kb on + strand, within AMB_RS03480at 728.095 kb on + strand, within AMB_RS03480at 728.095 kb on + strand, within AMB_RS03480at 728.095 kb on + strand, within AMB_RS03480at 728.096 kb on - strand, within AMB_RS03480at 728.096 kb on - strand, within AMB_RS03480at 728.096 kb on - strand, within AMB_RS03480at 728.097 kb on + strand, within AMB_RS03480at 728.097 kb on + strand, within AMB_RS03480at 728.097 kb on + strand, within AMB_RS03480at 728.097 kb on + strand, within AMB_RS03480at 728.098 kb on - strand, within AMB_RS03480at 728.160 kb on + strand, within AMB_RS03480at 728.161 kb on - strand, within AMB_RS03480at 728.226 kb on + strand, within AMB_RS03480at 728.226 kb on + strand, within AMB_RS03480at 728.226 kb on + strand, within AMB_RS03480at 728.227 kb on - strand, within AMB_RS03480at 728.232 kb on + strand, within AMB_RS03480at 728.232 kb on + strand, within AMB_RS03480at 728.232 kb on + strand, within AMB_RS03480at 728.233 kb on - strand, within AMB_RS03480at 728.233 kb on - strand, within AMB_RS03480at 728.233 kb on - strand, within AMB_RS03480at 728.259 kb on + strand, within AMB_RS03480at 728.259 kb on + strand, within AMB_RS03480at 728.259 kb on + strand, within AMB_RS03480at 728.259 kb on + strand, within AMB_RS03480at 728.259 kb on + strand, within AMB_RS03480at 728.259 kb on + strand, within AMB_RS03480at 728.259 kb on + strand, within AMB_RS03480at 728.259 kb on + strand, within AMB_RS03480at 728.259 kb on + strand, within AMB_RS03480at 728.259 kb on + strand, within AMB_RS03480at 728.259 kb on + strand, within AMB_RS03480at 728.259 kb on + strand, within AMB_RS03480at 728.259 kb on + strand, within AMB_RS03480at 728.260 kb on - strand, within AMB_RS03480at 728.260 kb on - strand, within AMB_RS03480at 728.260 kb on - strand, within AMB_RS03480at 728.334 kb on + strand, within AMB_RS03480at 728.335 kb on - strand, within AMB_RS03480at 728.403 kb on + strand, within AMB_RS03480at 728.404 kb on - strand, within AMB_RS03480at 728.404 kb on - strand, within AMB_RS03480at 728.619 kb on + strand, within AMB_RS03480at 728.620 kb on - strand, within AMB_RS03480at 728.620 kb on - strand, within AMB_RS03480at 728.620 kb on - strand, within AMB_RS03480at 728.620 kb on - strand, within AMB_RS03480at 728.620 kb on - strand, within AMB_RS03480at 728.682 kb on + strand, within AMB_RS03480at 728.682 kb on + strand, within AMB_RS03480at 728.682 kb on + strand, within AMB_RS03480at 728.682 kb on + strand, within AMB_RS03480at 728.682 kb on + strand, within AMB_RS03480at 728.683 kb on - strand, within AMB_RS03480at 728.683 kb on - strand, within AMB_RS03480at 728.768 kb on - strand, within AMB_RS03480at 728.769 kb on + strand, within AMB_RS03480at 728.769 kb on + strand, within AMB_RS03480at 728.769 kb on + strand, within AMB_RS03480at 728.769 kb on + strand, within AMB_RS03480at 728.770 kb on - strand, within AMB_RS03480at 728.770 kb on - strand, within AMB_RS03480at 728.796 kb on + strand, within AMB_RS03480at 728.797 kb on - strand, within AMB_RS03480at 728.866 kb on - strand, within AMB_RS03480at 728.928 kb on + strand, within AMB_RS03480at 728.949 kb on + strand, within AMB_RS03480at 728.950 kb on - strand, within AMB_RS03480at 728.950 kb on - strand, within AMB_RS03480at 728.950 kb on - strand, within AMB_RS03480at 728.950 kb on - strand, within AMB_RS03480at 729.159 kb on + strandat 729.159 kb on + strandat 729.160 kb on - strandat 729.160 kb on - strandat 729.336 kb on + strand, within AMB_RS03485at 729.336 kb on + strand, within AMB_RS03485at 729.336 kb on + strand, within AMB_RS03485at 729.336 kb on + strand, within AMB_RS03485at 729.337 kb on - strand, within AMB_RS03485at 729.337 kb on - strand, within AMB_RS03485at 729.366 kb on + strand, within AMB_RS03485at 729.367 kb on - strand, within AMB_RS03485at 729.367 kb on - strand, within AMB_RS03485at 729.367 kb on - strand, within AMB_RS03485at 729.423 kb on + strand, within AMB_RS03485at 729.423 kb on + strand, within AMB_RS03485at 729.423 kb on + strand, within AMB_RS03485at 729.807 kb on - strand, within AMB_RS03485at 729.822 kb on + strand, within AMB_RS03485at 729.822 kb on + strand, within AMB_RS03485at 729.822 kb on + strand, within AMB_RS03485at 729.822 kb on + strand, within AMB_RS03485at 729.822 kb on + strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_1
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727,080 + AMB_RS03475 0.54 -1.9
727,080 + AMB_RS03475 0.54 +0.4
727,240 + AMB_RS03475 0.64 +0.4
727,242 + AMB_RS03475 0.64 +1.2
727,242 + AMB_RS03475 0.64 +1.1
727,242 + AMB_RS03475 0.64 +0.1
727,243 - AMB_RS03475 0.64 +0.1
727,243 - AMB_RS03475 0.64 +0.9
727,320 + AMB_RS03475 0.69 +0.4
727,320 + AMB_RS03475 0.69 -1.1
727,320 + AMB_RS03475 0.69 -1.2
727,320 + AMB_RS03475 0.69 -0.3
727,321 - AMB_RS03475 0.69 -0.2
727,321 - AMB_RS03475 0.69 +0.6
727,321 - AMB_RS03475 0.69 -0.2
727,401 + AMB_RS03475 0.74 -0.8
727,402 - AMB_RS03475 0.74 -0.1
727,402 - AMB_RS03475 0.74 +0.4
727,402 - AMB_RS03475 0.74 +1.3
727,470 + AMB_RS03475 0.78 -0.1
727,471 - AMB_RS03475 0.78 -0.4
727,473 + AMB_RS03475 0.78 -1.0
727,473 + AMB_RS03475 0.78 -0.6
727,473 + AMB_RS03475 0.78 -0.9
727,473 + AMB_RS03475 0.78 -0.2
727,473 + AMB_RS03475 0.78 +0.4
727,473 + AMB_RS03475 0.78 -1.8
727,473 + AMB_RS03475 0.78 -0.1
727,474 - AMB_RS03475 0.78 +0.4
727,474 - AMB_RS03475 0.78 +0.4
727,474 - AMB_RS03475 0.78 +0.3
727,474 - AMB_RS03475 0.78 -1.2
727,474 - AMB_RS03475 0.78 -0.0
727,474 - AMB_RS03475 0.78 -0.6
727,474 - AMB_RS03475 0.78 +0.8
727,474 - AMB_RS03475 0.78 -0.6
727,474 - AMB_RS03475 0.78 +0.4
727,578 + AMB_RS03475 0.85 +0.0
727,578 + AMB_RS03475 0.85 -0.2
727,578 + AMB_RS03475 0.85 +0.6
727,578 + AMB_RS03475 0.85 -0.3
727,578 + AMB_RS03475 0.85 +2.4
727,578 + AMB_RS03475 0.85 +0.1
727,578 + AMB_RS03475 0.85 -0.9
727,578 + AMB_RS03475 0.85 -0.4
727,579 - AMB_RS03475 0.85 +3.9
727,579 - AMB_RS03475 0.85 -0.3
727,579 - AMB_RS03475 0.85 +1.2
727,579 - AMB_RS03475 0.85 -0.4
727,579 - AMB_RS03475 0.85 -0.3
727,579 - AMB_RS03475 0.85 -0.7
727,896 + -0.4
727,977 + -0.5
727,977 + -1.4
727,978 - -0.1
727,978 - -0.2
727,978 - -0.0
727,978 - -0.1
727,978 - +1.9
727,978 - -0.5
727,978 - -2.2
727,978 - +0.4
728,049 + +0.0
728,049 + +0.4
728,049 + -0.1
728,050 - -0.4
728,050 - -0.3
728,050 - -0.2
728,085 + -0.0
728,086 - -0.5
728,095 + AMB_RS03480 0.10 +0.2
728,095 + AMB_RS03480 0.10 -0.1
728,095 + AMB_RS03480 0.10 -0.1
728,095 + AMB_RS03480 0.10 -0.0
728,095 + AMB_RS03480 0.10 +0.4
728,096 - AMB_RS03480 0.10 -0.4
728,096 - AMB_RS03480 0.10 +0.3
728,096 - AMB_RS03480 0.10 -0.4
728,097 + AMB_RS03480 0.10 +0.4
728,097 + AMB_RS03480 0.10 -0.7
728,097 + AMB_RS03480 0.10 -0.1
728,097 + AMB_RS03480 0.10 -0.1
728,098 - AMB_RS03480 0.10 +0.5
728,160 + AMB_RS03480 0.16 -0.2
728,161 - AMB_RS03480 0.16 -0.1
728,226 + AMB_RS03480 0.21 -1.8
728,226 + AMB_RS03480 0.21 +0.6
728,226 + AMB_RS03480 0.21 -0.0
728,227 - AMB_RS03480 0.21 +0.2
728,232 + AMB_RS03480 0.22 -0.0
728,232 + AMB_RS03480 0.22 -0.4
728,232 + AMB_RS03480 0.22 -0.3
728,233 - AMB_RS03480 0.22 +0.4
728,233 - AMB_RS03480 0.22 -0.3
728,233 - AMB_RS03480 0.22 -0.2
728,259 + AMB_RS03480 0.24 -1.6
728,259 + AMB_RS03480 0.24 +0.4
728,259 + AMB_RS03480 0.24 +0.1
728,259 + AMB_RS03480 0.24 -0.9
728,259 + AMB_RS03480 0.24 +0.2
728,259 + AMB_RS03480 0.24 -0.1
728,259 + AMB_RS03480 0.24 +0.0
728,259 + AMB_RS03480 0.24 -1.4
728,259 + AMB_RS03480 0.24 -0.5
728,259 + AMB_RS03480 0.24 -0.4
728,259 + AMB_RS03480 0.24 -0.3
728,259 + AMB_RS03480 0.24 +0.3
728,259 + AMB_RS03480 0.24 -1.5
728,260 - AMB_RS03480 0.24 -1.4
728,260 - AMB_RS03480 0.24 -0.7
728,260 - AMB_RS03480 0.24 +0.1
728,334 + AMB_RS03480 0.31 -0.2
728,335 - AMB_RS03480 0.31 +0.4
728,403 + AMB_RS03480 0.36 +0.8
728,404 - AMB_RS03480 0.37 -1.2
728,404 - AMB_RS03480 0.37 +0.4
728,619 + AMB_RS03480 0.55 -0.3
728,620 - AMB_RS03480 0.55 -0.4
728,620 - AMB_RS03480 0.55 -0.9
728,620 - AMB_RS03480 0.55 +0.3
728,620 - AMB_RS03480 0.55 -0.7
728,620 - AMB_RS03480 0.55 -0.3
728,682 + AMB_RS03480 0.60 -0.1
728,682 + AMB_RS03480 0.60 -0.3
728,682 + AMB_RS03480 0.60 -0.3
728,682 + AMB_RS03480 0.60 -0.1
728,682 + AMB_RS03480 0.60 -0.3
728,683 - AMB_RS03480 0.60 +1.4
728,683 - AMB_RS03480 0.60 -0.1
728,768 - AMB_RS03480 0.68 +1.7
728,769 + AMB_RS03480 0.68 -1.9
728,769 + AMB_RS03480 0.68 -0.1
728,769 + AMB_RS03480 0.68 -0.3
728,769 + AMB_RS03480 0.68 -0.5
728,770 - AMB_RS03480 0.68 -2.4
728,770 - AMB_RS03480 0.68 +1.3
728,796 + AMB_RS03480 0.70 -0.2
728,797 - AMB_RS03480 0.70 +0.2
728,866 - AMB_RS03480 0.76 -0.3
728,928 + AMB_RS03480 0.81 -0.6
728,949 + AMB_RS03480 0.83 +0.4
728,950 - AMB_RS03480 0.83 -1.2
728,950 - AMB_RS03480 0.83 -0.3
728,950 - AMB_RS03480 0.83 +0.3
728,950 - AMB_RS03480 0.83 -0.5
729,159 + -1.0
729,159 + -0.2
729,160 - +0.8
729,160 - -0.8
729,336 + AMB_RS03485 0.13 -0.1
729,336 + AMB_RS03485 0.13 -0.4
729,336 + AMB_RS03485 0.13 +1.3
729,336 + AMB_RS03485 0.13 -0.0
729,337 - AMB_RS03485 0.13 -1.0
729,337 - AMB_RS03485 0.13 -0.7
729,366 + AMB_RS03485 0.16 +0.3
729,367 - AMB_RS03485 0.16 -0.3
729,367 - AMB_RS03485 0.16 +0.1
729,367 - AMB_RS03485 0.16 -0.3
729,423 + AMB_RS03485 0.22 -0.2
729,423 + AMB_RS03485 0.22 -0.1
729,423 + AMB_RS03485 0.22 +1.0
729,807 - AMB_RS03485 0.63 -0.1
729,822 + AMB_RS03485 0.64 -0.0
729,822 + AMB_RS03485 0.64 +1.4
729,822 + AMB_RS03485 0.64 -0.2
729,822 + AMB_RS03485 0.64 -0.5
729,822 + AMB_RS03485 0.64 -0.5
729,823 - AMB_RS03485 0.64 +0.2
729,823 - AMB_RS03485 0.64 +3.1
729,823 - AMB_RS03485 0.64 -1.0
729,823 - AMB_RS03485 0.64 +0.6
729,823 - AMB_RS03485 0.64 -1.0
729,823 - AMB_RS03485 0.64 +0.1
729,823 - AMB_RS03485 0.64 +0.7
729,823 - AMB_RS03485 0.64 -0.5
729,823 - AMB_RS03485 0.64 +0.0
729,823 - AMB_RS03485 0.64 -0.5
729,823 - AMB_RS03485 0.64 +0.4

Or see this region's nucleotide sequence