Experiment: 30_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03415 and AMB_RS03420 are separated by 269 nucleotides AMB_RS03420 and AMB_RS03425 are separated by 22 nucleotides AMB_RS03425 and AMB_RS03435 are separated by 235 nucleotides
AMB_RS03415: AMB_RS03415 - peroxiredoxin, at 715,512 to 716,135
_RS03415
AMB_RS03420: AMB_RS03420 - Lrp/AsnC family transcriptional regulator, at 716,405 to 716,905
_RS03420
AMB_RS03425: AMB_RS03425 - hypothetical protein, at 716,928 to 717,689
_RS03425
AMB_RS03435: AMB_RS03435 - PAS domain-containing sensor histidine kinase, at 717,925 to 719,685
_RS03435
Position (kb) 716
717
718 Strain fitness (log2 ratio) -2
-1
0
1
2 at 716.136 kb on + strand at 716.220 kb on + strand at 716.221 kb on - strand at 716.255 kb on + strand at 716.258 kb on + strand at 716.258 kb on + strand at 716.367 kb on + strand at 716.369 kb on + strand at 716.390 kb on + strand at 716.903 kb on + strand at 716.904 kb on - strand at 716.904 kb on - strand at 716.904 kb on - strand at 716.951 kb on - strand at 716.951 kb on - strand at 716.957 kb on + strand at 716.958 kb on - strand at 717.126 kb on + strand, within AMB_RS03425 at 717.192 kb on - strand, within AMB_RS03425 at 717.210 kb on + strand, within AMB_RS03425 at 717.211 kb on - strand, within AMB_RS03425 at 717.211 kb on - strand, within AMB_RS03425 at 717.211 kb on - strand, within AMB_RS03425 at 717.213 kb on + strand, within AMB_RS03425 at 717.213 kb on + strand, within AMB_RS03425 at 717.213 kb on + strand, within AMB_RS03425 at 717.213 kb on + strand, within AMB_RS03425 at 717.213 kb on + strand, within AMB_RS03425 at 717.213 kb on + strand, within AMB_RS03425 at 717.214 kb on - strand, within AMB_RS03425 at 717.214 kb on - strand, within AMB_RS03425 at 717.288 kb on + strand, within AMB_RS03425 at 717.663 kb on + strand at 717.663 kb on + strand at 717.663 kb on + strand at 717.663 kb on + strand at 717.663 kb on + strand at 717.663 kb on + strand at 717.663 kb on + strand at 717.664 kb on - strand at 717.664 kb on - strand at 717.664 kb on - strand at 717.664 kb on - strand at 717.664 kb on - strand at 717.664 kb on - strand at 717.694 kb on + strand at 717.694 kb on + strand at 717.695 kb on - strand at 717.695 kb on - strand at 717.695 kb on - strand at 717.781 kb on + strand at 718.229 kb on + strand, within AMB_RS03435 at 718.543 kb on + strand, within AMB_RS03435 at 718.544 kb on - strand, within AMB_RS03435 at 718.609 kb on + strand, within AMB_RS03435 at 718.609 kb on + strand, within AMB_RS03435 at 718.609 kb on + strand, within AMB_RS03435 at 718.610 kb on - strand, within AMB_RS03435
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_1 remove 716,136 + -2.2 716,220 + -0.5 716,221 - -0.4 716,255 + -0.9 716,258 + -2.3 716,258 + -1.2 716,367 + -1.6 716,369 + -0.7 716,390 + -1.9 716,903 + -0.4 716,904 - +0.3 716,904 - -0.3 716,904 - -1.1 716,951 - +0.8 716,951 - +0.1 716,957 + -0.3 716,958 - +0.5 717,126 + AMB_RS03425 0.26 -0.1 717,192 - AMB_RS03425 0.35 -0.9 717,210 + AMB_RS03425 0.37 +0.4 717,211 - AMB_RS03425 0.37 +0.6 717,211 - AMB_RS03425 0.37 +2.4 717,211 - AMB_RS03425 0.37 -0.6 717,213 + AMB_RS03425 0.37 +0.8 717,213 + AMB_RS03425 0.37 -0.5 717,213 + AMB_RS03425 0.37 -0.7 717,213 + AMB_RS03425 0.37 -0.8 717,213 + AMB_RS03425 0.37 -0.9 717,213 + AMB_RS03425 0.37 -0.7 717,214 - AMB_RS03425 0.38 -1.6 717,214 - AMB_RS03425 0.38 -0.5 717,288 + AMB_RS03425 0.47 +0.9 717,663 + -0.8 717,663 + +0.8 717,663 + -0.5 717,663 + -0.2 717,663 + +0.0 717,663 + -0.6 717,663 + -1.4 717,664 - -0.7 717,664 - +0.6 717,664 - -0.4 717,664 - +0.2 717,664 - +0.4 717,664 - -1.4 717,694 + -0.4 717,694 + -0.4 717,695 - -0.1 717,695 - +1.2 717,695 - -0.8 717,781 + +0.3 718,229 + AMB_RS03435 0.17 +0.3 718,543 + AMB_RS03435 0.35 -0.4 718,544 - AMB_RS03435 0.35 -0.1 718,609 + AMB_RS03435 0.39 -0.8 718,609 + AMB_RS03435 0.39 +0.6 718,609 + AMB_RS03435 0.39 +0.4 718,610 - AMB_RS03435 0.39 -0.3
Or see this region's nucleotide sequence