Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02680

Experiment: 30_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02670 and AMB_RS02675 overlap by 38 nucleotidesAMB_RS02675 and AMB_RS02680 are separated by 66 nucleotidesAMB_RS02680 and AMB_RS02685 are separated by 132 nucleotides AMB_RS02670: AMB_RS02670 - polyhydroxyalkanoate depolymerase, at 555,750 to 556,976 _RS02670 AMB_RS02675: AMB_RS02675 - YcgN family cysteine cluster protein, at 556,939 to 557,421 _RS02675 AMB_RS02680: AMB_RS02680 - hypothetical protein, at 557,488 to 557,856 _RS02680 AMB_RS02685: AMB_RS02685 - glutamate synthase large subunit, at 557,989 to 562,503 _RS02685 Position (kb) 557 558Strain fitness (log2 ratio) -3 -2 -1 0 1at 556.491 kb on + strand, within AMB_RS02670at 556.492 kb on - strand, within AMB_RS02670at 556.620 kb on + strand, within AMB_RS02670at 556.621 kb on - strand, within AMB_RS02670at 556.621 kb on - strand, within AMB_RS02670at 556.621 kb on - strand, within AMB_RS02670at 556.621 kb on - strand, within AMB_RS02670at 556.629 kb on + strand, within AMB_RS02670at 556.629 kb on + strand, within AMB_RS02670at 556.629 kb on + strand, within AMB_RS02670at 556.659 kb on + strand, within AMB_RS02670at 556.659 kb on + strand, within AMB_RS02670at 556.660 kb on - strand, within AMB_RS02670at 556.662 kb on + strand, within AMB_RS02670at 556.662 kb on + strand, within AMB_RS02670at 556.662 kb on + strand, within AMB_RS02670at 556.662 kb on + strand, within AMB_RS02670at 556.662 kb on + strand, within AMB_RS02670at 556.663 kb on - strand, within AMB_RS02670at 556.841 kb on + strand, within AMB_RS02670at 556.842 kb on - strand, within AMB_RS02670at 556.842 kb on - strand, within AMB_RS02670at 556.842 kb on - strand, within AMB_RS02670at 556.893 kb on + strandat 556.894 kb on - strandat 556.932 kb on + strandat 556.933 kb on - strandat 557.116 kb on + strand, within AMB_RS02675at 557.170 kb on + strand, within AMB_RS02675at 557.171 kb on - strand, within AMB_RS02675at 557.171 kb on - strand, within AMB_RS02675at 557.171 kb on - strand, within AMB_RS02675at 557.171 kb on - strand, within AMB_RS02675at 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.395 kb on + strandat 557.396 kb on - strandat 557.396 kb on - strandat 557.396 kb on - strandat 557.396 kb on - strandat 557.396 kb on - strandat 557.459 kb on + strandat 557.459 kb on + strandat 557.459 kb on + strandat 557.459 kb on + strandat 557.466 kb on - strandat 557.466 kb on - strandat 557.825 kb on + strandat 557.880 kb on + strandat 557.978 kb on + strandat 557.978 kb on + strandat 557.979 kb on - strandat 557.979 kb on - strandat 558.058 kb on + strandat 558.059 kb on - strandat 558.059 kb on - strandat 558.059 kb on - strandat 558.077 kb on - strandat 558.246 kb on - strandat 558.329 kb on + strandat 558.329 kb on + strandat 558.329 kb on + strandat 558.329 kb on + strandat 558.330 kb on - strandat 558.330 kb on - strandat 558.330 kb on - strandat 558.330 kb on - strandat 558.330 kb on - strandat 558.330 kb on - strandat 558.444 kb on - strand, within AMB_RS02685at 558.545 kb on + strand, within AMB_RS02685at 558.545 kb on + strand, within AMB_RS02685at 558.545 kb on + strand, within AMB_RS02685at 558.546 kb on - strand, within AMB_RS02685at 558.546 kb on - strand, within AMB_RS02685at 558.546 kb on - strand, within AMB_RS02685at 558.546 kb on - strand, within AMB_RS02685at 558.731 kb on + strand, within AMB_RS02685at 558.732 kb on - strand, within AMB_RS02685at 558.732 kb on - strand, within AMB_RS02685at 558.836 kb on + strand, within AMB_RS02685at 558.837 kb on - strand, within AMB_RS02685

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_1
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556,491 + AMB_RS02670 0.60 +0.7
556,492 - AMB_RS02670 0.60 +1.4
556,620 + AMB_RS02670 0.71 -0.6
556,621 - AMB_RS02670 0.71 -0.7
556,621 - AMB_RS02670 0.71 -0.1
556,621 - AMB_RS02670 0.71 -1.3
556,621 - AMB_RS02670 0.71 -0.4
556,629 + AMB_RS02670 0.72 +0.8
556,629 + AMB_RS02670 0.72 +0.6
556,629 + AMB_RS02670 0.72 +1.4
556,659 + AMB_RS02670 0.74 -0.4
556,659 + AMB_RS02670 0.74 -0.9
556,660 - AMB_RS02670 0.74 -0.5
556,662 + AMB_RS02670 0.74 -0.6
556,662 + AMB_RS02670 0.74 -0.8
556,662 + AMB_RS02670 0.74 +0.2
556,662 + AMB_RS02670 0.74 -0.1
556,662 + AMB_RS02670 0.74 -1.1
556,663 - AMB_RS02670 0.74 -0.3
556,841 + AMB_RS02670 0.89 -0.5
556,842 - AMB_RS02670 0.89 -0.0
556,842 - AMB_RS02670 0.89 +0.1
556,842 - AMB_RS02670 0.89 +0.5
556,893 + +0.4
556,894 - -0.2
556,932 + -0.7
556,933 - -0.2
557,116 + AMB_RS02675 0.37 -0.5
557,170 + AMB_RS02675 0.48 -0.6
557,171 - AMB_RS02675 0.48 -1.1
557,171 - AMB_RS02675 0.48 +0.4
557,171 - AMB_RS02675 0.48 -0.1
557,171 - AMB_RS02675 0.48 -0.3
557,395 + -1.5
557,395 + +0.5
557,395 + +0.4
557,395 + -0.1
557,395 + -0.0
557,395 + +0.7
557,395 + -0.7
557,396 - -0.4
557,396 - -1.4
557,396 - -0.1
557,396 - -1.1
557,396 - -0.9
557,459 + -0.6
557,459 + +0.6
557,459 + -0.1
557,459 + -0.4
557,466 - +0.7
557,466 - +0.3
557,825 + +0.5
557,880 + -0.8
557,978 + -1.4
557,978 + -0.4
557,979 - -0.2
557,979 - +0.7
558,058 + -1.5
558,059 - -0.4
558,059 - +0.4
558,059 - -1.2
558,077 - -0.7
558,246 - -1.3
558,329 + -2.4
558,329 + +1.0
558,329 + -3.0
558,329 + -0.5
558,330 - +0.0
558,330 - -2.2
558,330 - -2.0
558,330 - -1.3
558,330 - -0.2
558,330 - -0.0
558,444 - AMB_RS02685 0.10 +0.4
558,545 + AMB_RS02685 0.12 -0.2
558,545 + AMB_RS02685 0.12 -1.4
558,545 + AMB_RS02685 0.12 -1.0
558,546 - AMB_RS02685 0.12 -0.7
558,546 - AMB_RS02685 0.12 -0.0
558,546 - AMB_RS02685 0.12 -1.4
558,546 - AMB_RS02685 0.12 -0.7
558,731 + AMB_RS02685 0.16 -0.6
558,732 - AMB_RS02685 0.16 +0.1
558,732 - AMB_RS02685 0.16 -2.2
558,836 + AMB_RS02685 0.19 -1.2
558,837 - AMB_RS02685 0.19 -1.6

Or see this region's nucleotide sequence